Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1700 ATGCAAATTGCTTTGAACTCAAACTACTGCCTTTATAGATGCCAAACCCATCGGCTTCTTCAACTTCAGCCCTTTCTGCTTCCTTGTTCCACAGCCTTCGGATTCCCAACCCTAAGCCCCCTTCATTGCAGAGCAATGGCTTCATCTCCACCTTCCGTCCAAGTAAGGGACAGCATTGATCTGACGCCCAAGGAGACCCAGATTTTCCAGAAACTTCTCCAAGTTGTTCGCCACTTTTCTCTCCGAACTCAGCTCCGCGTCGCCGGTGGCTGGGTCCGCGACAAGCTTCTAGGGAAGGAATGTTATGATATTGATATTGCTCTGGATGACATGCTGGGCAGAGAGTTTTGTGAGAAGATCAATGATTACTTGTCATGTACAGGGGAGGAAAAGCAAGGAATAGGTGTTATTCAATGTAACCCTGACCAGTCCAAACACTTGGAAACAGCAAGGATGCGCCTTTTTGATGAATGGATTGATTTTGTAAACTTAAGGTCTGAAGATTATAGCGAAAATAGCCGGATCCCGACAATGAGATTTGGCACTGCCAAAGAGGATGCATACCGAAGGGATTTAACCATTAATAGCTTGTTCTACAACATCAACACCAGTTCTGTTGAAGATTTTACTGGGAGAGGCATTGAGGATCTGAAGTCTGGAAAAATAGTTACACCATTACCTCCAAAGGATACATTTTTAGATGATCCCCTACGAGTTCTTCGGGCTATCCGTTTCGGCGCCAGGTTTGGGTTCATACTAGATGAAGAGTTAAAGTTGGCTGCTGGTTGTGATGATGTGAGAGCTGCCATTGCGGATAAAATTAGCAGAGAACGTATTGGTCATGAAATTGATCTTATGATCTCTGGCAATGAGCCGGTTAAAGCAATGACATACATCTGTGATTTGCTATTATTTTCGGTTGTCTTCAGTCTTCCTCCTATTGTTAAGCCTGCCATATCTGAAGAATGTGATAGGCTCTGCATTGGTTACATCGATGCTGGGTGGAACCTAATACAATTAATTGGATCCTCTACTTTCAATGATGAACAAAGAAGGCTCTATTTGTATGCGGCTTTGTTTCTTCCATTCAGAAAGACACTGTACGAGGGTGGCAAAGCTAGAAAGATTCCCGTTGTCAACCACATCATTCGGAACTCTCTTAAGCTAAGAGCTAGTGATGCTGACACGGTTGTAAGCATACACTGTGCAGTGGAGAAATTCATTTCCTTGATTCCCTTCATTGAATCCACTGAAAGCATTCAAATTTCTGAAGCTGAATGGGGAATTGAAATTCTTGATCTTCCTGTTACTTCAAAATTGCGAATATTGACAGGGTTGCTTCTGCGGGAAATCAAAGGTTTTTGGCGAGTTGCCTTGATGGTGTCCACATTATTATACCCAAATGATATTAATCATACTCGGGATATTTCGAAGAATAACTTTCAGTTGGATAAGAGAAGAAAGGTTTTTGAAATGGTTGAGAATGCCATTGTCGGACTAGGTCTAGAGGAAGTTTGGGAACTGAAACCCTTGGTTAACGGGAAGGATATCATGAATGTTTTGCAGCTTAAATCTGGAGGGCCACTCGTGAGGGATTGGCAACAAAAACTGATTCAGTGGCAGCTTGCACATCCCTCTGGGACTGCTGAGGAATGCCTTGATTGGATGAGGCAAAAGCGGCCAAAGCGCGAGTAA 1695 0.4336 MQIALNSNYCLYRCQTHRLLQLQPFLLPCSTAFGFPTLSPLHCRAMASSPPSVQVRDSIDLTPKETQIFQKLLQVVRHFSLRTQLRVAGGWVRDKLLGKECYDIDIALDDMLGREFCEKINDYLSCTGEEKQGIGVIQCNPDQSKHLETARMRLFDEWIDFVNLRSEDYSENSRIPTMRFGTAKEDAYRRDLTINSLFYNINTSSVEDFTGRGIEDLKSGKIVTPLPPKDTFLDDPLRVLRAIRFGARFGFILDEELKLAAGCDDVRAAIADKISRERIGHEIDLMISGNEPVKAMTYICDLLLFSVVFSLPPIVKPAISEECDRLCIGYIDAGWNLIQLIGSSTFNDEQRRLYLYAALFLPFRKTLYEGGKARKIPVVNHIIRNSLKLRASDADTVVSIHCAVEKFISLIPFIESTESIQISEAEWGIEILDLPVTSKLRILTGLLLREIKGFWRVALMVSTLLYPNDINHTRDISKNNFQLDKRRKVFEMVENAIVGLGLEEVWELKPLVNGKDIMNVLQLKSGGPLVRDWQQKLIQWQLAHPSGTAEECLDWMRQKRPKRE* 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1700 564 CDD NT_ClassII-CCAase 62 218 IPR002646 GO:0003723|GO:0006396|GO:0016779
Vvi18g1700 564 FunFam Polynucleotide adenylyltransferase family protein 222 443 - -
Vvi18g1700 564 FunFam tRNA nucleotidyltransferase cca2 52 218 - -
Vvi18g1700 564 SUPERFAMILY Poly A polymerase C-terminal region-like 222 559 - -
Vvi18g1700 564 SUPERFAMILY Nucleotidyltransferase 61 219 IPR043519 -
Vvi18g1700 564 Pfam Poly A polymerase head domain 85 222 IPR002646 GO:0003723|GO:0006396|GO:0016779
Vvi18g1700 564 Gene3D - 221 548 - -
Vvi18g1700 564 Gene3D Beta Polymerase, domain 2 52 218 IPR043519 -
Vvi18g1700 564 PANTHER TRNA-NUCLEOTIDYLTRANSFERASE 45 563 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1700 Vvi-Chr18 22618209 22638350 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1700 - - vvi:100257606 1135.94