Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1692 ATGCCTCTTGTTACTATGATAATATGTTGTTGCATGTCATCTTTTGTTAGTCTGAAAATTAGTACTAGCATTAACGTACAATTATGGTTTTGCAGGCATGGGGTGACCATGCCTAAATATCCATGGACAGATGGTCCTGAGTATATCACACAATGCCCAATTCAACCAGGGTCAAAGTTTAGACAGAAGATCATCCTTTCCTTTGAGGAAGGCACTCTATGGTGGCATGCTCATAGTGATTGGACTCGAGCCACCGTTCATGGAGCTATAATTGTCTATCCCAAGAATGGAACCAAGTATCCTTTTCACAAACCGAATGCAGAAGTTCTCATCATATTAGGACAATGGTGGAAGAAAGATGTGAATGAGGTTCGAGATGAAGCGCTTGCAACTGGAGCCGACGCCAATGCCTCTAATTCTTTATTGATAAATGGACAACCCGGTGATCTACTTCCATGCTCAAAATCAGGCACATTCAAGCTAACGGTGGATCATGGAAAAACTTATCTGCTTCGCATAATCAATGCTGCCTTGCAAGAGGCTCTCTTCTTCTCCATTGCCAAGCATAAAATAACAGTGGTTGGAACAGATGGTAGCTACACGAAACCATTGACACGAGATTATATCACAATATTTCCTGGCCAAACCTATGATGTCTTACTAAAAGCTAACCGACGCCCAGATCACTATTACATGGCGGCTAAAACTTATGCCGAAGTCCCGATAGCTGGTAATAGATTTTATGATAACACAACCACCACAGCTATTGTACAATACAGGGGATACTACACTCCATCTTCACCTCCCTCCTTGCCTCATTTTCCTGCATACAATGACACAAATGCATCGGTTCAGGTCATGGCCAGCCTCCGAAGCTTAGCAGATGTGGAACATCCTTGCAATGTCCCATTGAGCACGAGCACTAAACTAATTTACACTGTTTCTGTAAACTCGTACCCATGCGTCAATAATTCATGTGAAGGGGCCAATGGGACGCGGTCTGCCGCAAGTATAAACAACATAAGCTTCCATACCCCTACAGTTGACATACTGGAAGCTTACTATTATAACATCAGTGGTGTATATGGAGATAAGTTTCCTAGTGTTCCACCACTGGTGTTCGATTTTACAGCTGATTATCTTCCATTACTCTATCAGTTACCGAGCACCGGAACAGAAGTAAGGGTGTTGGAGTATAACTCGACAGTGGAGATTGTTTTTCAAGGGACAAACTTGGTTGCTGGGACATTTCACCCCATACATCTCCATGGACACAGTTTCTATGTTGTTGGGTGGGGATTTGGGAATTTCGATGAAAATAGGGACCCTTTGCGCTATAACCTGGTGGATCCTCCCTTTCAGAATACCATCTCTGTTCCTGCGAATGGTTGGGCTGCAATCAGATTCGAGGCATCCAACCCTGGAGTGTGGTTCATGCACTGCCATGTAGAACGCCATCTGACTTGGGGCATGGAAACTGCGTTCATAGTGAAAAATGGTAAACACCCGGAAGCTCAAATGCTGCCTCCTCCGTCAGACATGCCACCATGTTGA 1554 0.4408 MPLVTMIICCCMSSFVSLKISTSINVQLWFCRHGVTMPKYPWTDGPEYITQCPIQPGSKFRQKIILSFEEGTLWWHAHSDWTRATVHGAIIVYPKNGTKYPFHKPNAEVLIILGQWWKKDVNEVRDEALATGADANASNSLLINGQPGDLLPCSKSGTFKLTVDHGKTYLLRIINAALQEALFFSIAKHKITVVGTDGSYTKPLTRDYITIFPGQTYDVLLKANRRPDHYYMAAKTYAEVPIAGNRFYDNTTTTAIVQYRGYYTPSSPPSLPHFPAYNDTNASVQVMASLRSLADVEHPCNVPLSTSTKLIYTVSVNSYPCVNNSCEGANGTRSAASINNISFHTPTVDILEAYYYNISGVYGDKFPSVPPLVFDFTADYLPLLYQLPSTGTEVRVLEYNSTVEIVFQGTNLVAGTFHPIHLHGHSFYVVGWGFGNFDENRDPLRYNLVDPPFQNTISVPANGWAAIRFEASNPGVWFMHCHVERHLTWGMETAFIVKNGKHPEAQMLPPPSDMPPC* 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1692 517 Pfam Multicopper oxidase 389 500 IPR011706 GO:0005507|GO:0016491
Vvi18g1692 517 ProSitePatterns Multicopper oxidases signature 1. 475 495 IPR033138 -
Vvi18g1692 517 Pfam Multicopper oxidase 11 96 IPR011707 GO:0005507
Vvi18g1692 517 Pfam Multicopper oxidase 108 261 IPR001117 -
Vvi18g1692 517 SUPERFAMILY Cupredoxins 30 119 IPR008972 -
Vvi18g1692 517 PANTHER MULTI-COPPER OXIDASE 33 505 IPR045087 -
Vvi18g1692 517 Gene3D - 320 517 IPR008972 -
Vvi18g1692 517 Gene3D - 17 105 IPR008972 -
Vvi18g1692 517 CDD CuRO_3_LCC_plant 361 500 IPR034289 GO:0005507
Vvi18g1692 517 ProSitePatterns Multicopper oxidases signature 2. 480 491 IPR002355 GO:0005507
Vvi18g1692 517 Gene3D - 106 296 IPR008972 -
Vvi18g1692 517 SUPERFAMILY Cupredoxins 328 517 IPR008972 -
Vvi18g1692 517 CDD CuRO_2_LCC_plant 109 259 IPR034285 -
Vvi18g1692 517 NCBIfam laccase 16 517 IPR017761 GO:0046274|GO:0048046|GO:0052716
Vvi18g1692 517 SUPERFAMILY Cupredoxins 102 296 IPR008972 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1692 Vvi-Chr18 22524258 22526307 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1692 K05909 - vvi:100242375 1023.85