Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1690 ATGAAGGGTCCGTTGGATCGAACCAAGGTCATGGTCCGGCACTTGCCGCCGATGATTTTGGAGGCCGCGTTTTTGGAACAAATCAATACCGTCTTCAAGGGGCGCTACACCTTGGTCAAGTTTCGTCCCGGGAAAAACAGCCAGCAAAGACAGTCCTATTCTAGAGCCTACCTTGACTTCAAGAGGCCGGAGGACGTTATTGAGTTTGCTGAGTTCTTTGATGGGCATGTTTTTGTTAATGAGAAAGGTACTCAGTTTAAAACTATTGTTGAGTATGCTCCTTCACAACGCATTCCAAAACATTGGCCTAAAAAGGATAGCCGTGAAGGGACAATATTTAAAGATCCTGAGTACCTGGAGTTCCTTGAACTTCTTGCGAAGCCTTTTGAGAATCTTCCCAGTGCAGAAATACAATTGGAGAGAAGAGAAGCAGAACGAGCTGGTGCTGTGAAGGACACTCCTATAGTTATGCCTCTAATGGATTTTGTCCGTCAGAAAAGAGCTTCCAAGGGTAGAAGACTCTCCACCACAATGTATGTTTTACGGGATGCTGCAAAGAACACAAGTGCAAAAGACAAGTCAACGTTCAGTCTGGTTCCAAAGCGAGATGACCAGCTGCTGTCTGATAAGTCTGTTAATCTAGCTGCTGGAGGTGGAGCTGAAGCATTGAAAGAGGAAAGTGGAGTTTCTGGAGCTGTTGATGCTGGGAAGAAGAAAGTCCTCCTCCTGAAAGGAAAAGAGAGAGAAATTTCTCATCATTTACAGCAGCAGAATGTAACATCTCCAGTAAAGAATATACTTGGTGCAAATTCTCCCAAGCAGAATCAGAGACGTGAAGGTAGTGGAAGGATAATCAGAAGCATACTTTTAAACAAGGATGCACGTCAAAGTCAATCTTCTATGTTCCAGTCGGGGCAACAGTCCCAAGCCTCTAACTTAGAGAAGGAGAAACGACCTCCTCGCCCTCCACAGCTGTACACACAGCCTGCAATGCAAAGGAAGGTGAGGGACGCCGCTTTGCAAACCCCCAAAGCAAGGAATTTCTGCGGGCAACAACTGAAAAGAGATGAGTGA 1074 0.4572 MKGPLDRTKVMVRHLPPMILEAAFLEQINTVFKGRYTLVKFRPGKNSQQRQSYSRAYLDFKRPEDVIEFAEFFDGHVFVNEKGTQFKTIVEYAPSQRIPKHWPKKDSREGTIFKDPEYLEFLELLAKPFENLPSAEIQLERREAERAGAVKDTPIVMPLMDFVRQKRASKGRRLSTTMYVLRDAAKNTSAKDKSTFSLVPKRDDQLLSDKSVNLAAGGGAEALKEESGVSGAVDAGKKKVLLLKGKEREISHHLQQQNVTSPVKNILGANSPKQNQRREGSGRIIRSILLNKDARQSQSSMFQSGQQSQASNLEKEKRPPRPPQLYTQPAMQRKVRDAALQTPKARNFCGQQLKRDE* 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1690 357 MobiDBLite consensus disorder prediction 253 282 - -
Vvi18g1690 357 CDD RRM_like_Smg4_UPF3 9 94 - -
Vvi18g1690 357 MobiDBLite consensus disorder prediction 295 313 - -
Vvi18g1690 357 PANTHER UPF3 REGULATOR OF NONSENSE TRANSCRIPTS-LIKE PROTEIN 2 335 IPR039722 GO:0000184
Vvi18g1690 357 Pfam Smg-4/UPF3 family 7 168 IPR005120 -
Vvi18g1690 357 MobiDBLite consensus disorder prediction 254 278 - -
Vvi18g1690 357 SUPERFAMILY RNA-binding domain, RBD 8 97 IPR035979 GO:0003676
Vvi18g1690 357 MobiDBLite consensus disorder prediction 295 357 - -
Vvi18g1690 357 Gene3D - 4 97 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1690 Vvi-Chr18 22489242 22492876 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1690 K14328 - vvi:100852735 563.533