Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1685 ATGAAGGGTCCGTTGGATCGAACCAAGGTCATGGTCCGGCACTTGCCGCCGATGATTTCGGAGGCCGCATTTTTGGAACAAATCGATACCGTCTTCAAGGAGCGCTACACCTTGGTCAAGTTTTGTCCCGGGAAAAACAGCCAGCAGCGACAGTCCTATTCTAGAGCCTACCTTGACTTCAAGAGGCCGGAGGACGTTATTGAGTTTGCTGAGTTCTTTGATGGGCATGTTTTTGTTAATGAGAAAGGTACTCAGTTTAAAACTATTGTTGAGTATGCTCCTTCACAACGCATTCCAAAACATTGGCCTAAAAAGGATGGCCGTGAAGGGACAATATTTAAAGATCCTGAGTACCTGGAGTCCCTTGAACTTCTTGCGAAGCCTTTTGAGAATCTTCCCAGTGCAGAAATACAATTGGAGAGAAGAGAAGCAGAACGAGCTGGTGCTGTGAAGGACACTCCTATAGTTATGCCTCTAATGGATTTTGTCCGTCAGAAAAGAGCTGCCAAGGGTAGAAGACTCTCCACCACAATGTATGTTTTACGGGATGCTGCAAAGAACACAAGTGCAAAAGACAAGTCAACGTTCATTCTGGTTCCAAAGCGAGCTGACCAGCTGCTGTCTGATAAGTCTGTTAATCTAGCTGCTGGAGGTGGAGCTGAAGCATTGAAAGAGGAAAGTGGAGTTTCTGGAGCTGTTGATGCTGGGAAGAAGAAAGTCCTCCTCCTGAAAGGAAAAGAGAGAGAAATTTCTCATCATTTACAGCAGCAGAATGTAACATCTCCAGTAAAGAATATACTTGGTGCAAATGCTCCCAAGCAGAATCAGAGACGTGAAGGTAGTGGAAGGATAATCAGAAGCATACTTTTAAACAAGGATGCACGTCAAAGTCAATCTTCTATGTTCCAGTCGGAGCAACAGTCCCAAGCCTCTAACTTAGAGAAGGAGAAACGACCTCCTCGCCCTCCACAGCTGTACACACAGCCTGAAATGCAAAGGAAGGTAAGGGACGCCGCGGCTGTTTGA 1026 0.46 MKGPLDRTKVMVRHLPPMISEAAFLEQIDTVFKERYTLVKFCPGKNSQQRQSYSRAYLDFKRPEDVIEFAEFFDGHVFVNEKGTQFKTIVEYAPSQRIPKHWPKKDGREGTIFKDPEYLESLELLAKPFENLPSAEIQLERREAERAGAVKDTPIVMPLMDFVRQKRAAKGRRLSTTMYVLRDAAKNTSAKDKSTFILVPKRADQLLSDKSVNLAAGGGAEALKEESGVSGAVDAGKKKVLLLKGKEREISHHLQQQNVTSPVKNILGANAPKQNQRREGSGRIIRSILLNKDARQSQSSMFQSEQQSQASNLEKEKRPPRPPQLYTQPEMQRKVRDAAAV* 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1685 341 CDD RRM_like_Smg4_UPF3 9 94 - -
Vvi18g1685 341 MobiDBLite consensus disorder prediction 258 277 - -
Vvi18g1685 341 SUPERFAMILY RNA-binding domain, RBD 8 97 IPR035979 GO:0003676
Vvi18g1685 341 Gene3D - 4 97 IPR012677 -
Vvi18g1685 341 Pfam Smg-4/UPF3 family 7 168 IPR005120 -
Vvi18g1685 341 PANTHER UPF3 REGULATOR OF NONSENSE TRANSCRIPTS-LIKE PROTEIN 2 330 IPR039722 GO:0000184
Vvi18g1685 341 MobiDBLite consensus disorder prediction 258 282 - -
Vvi18g1685 341 MobiDBLite consensus disorder prediction 295 310 - -
Vvi18g1685 341 MobiDBLite consensus disorder prediction 295 341 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1685 Vvi-Chr18 22395059 22396182 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1685 K14328 - vvi:100852735 565.074