Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1682 ATGCCTAGATATCCATGGACAGATGGTCCCGAGTATATCACACAATGCCCAATTCAGCCAGGGTCTAAGTTTAGCCAAAAGATCATCCTTTCCTCTGAGGAAGGCACAATATGGTGGCATGCTCATAGTGACTGGACTCGAGCCACCGTTCATGGAGCTATAATCGTCTATCCCAAGAATGGAACTAAGTATCCGTTTCACAAACCTAACACAGAATTTCTCATCATATTAGGGCAATGGTGGAAGATTGATGTGAATGCAGTTCGAGATGAAGGGCTCGCAACTGGAGCTGATCCTAATGCCTCTGATGCGTTATTGATAAATGGACAACCCGGTGATCTATATCCATGCTCAAAATCAAGCACATTCAAGCTAACGGTGGATCATGGAAAGACTTATCTACTTCGCATAATCAATGCTGCCTTGCAGGAGGCTCTTTTCTTCTCCATTGCCAAGCATAAAATGACAGTGGTTGGAACAGATGGTAGCTACACGAAACCATTGACACGAGATTATATTACAATATTTCCTGGCCAAACCTACGATGTCTTATTAGAAGCTAACCAACGCCCGGATCACTATTACATGGCGGCTATAACTTATTCTGTTGCCCCGAAATATCAAAATTTTTATGATAACACAACCACCACAGCTATTGTACAGTACAGGGGATACTACACTCCATCTTCACCTCCCTCCTTGCCTTATCTTCCTGCATATAATGACACAAATGCATCAGTTCAGGTCATGGCTGACCTCCGAAGCTTAGCAAATCCTGAACATCCTTGCAATGTCCCATTGAGCACAAGCACTAACCTGATTTACACTGTTTCTGTAAACTCGTACCCTTGCATCAATGATTCATGTGCAGGGGCCAATGGGACGCGGTTCTCCTCAAGTATAAACAACATAAGCTTCGATACCCCTACTGTTGACATACTGCAAGCTTACTATTATAACATAAGTGGTGTATATGGAGATAAATTTCCTAGCGTTCCACCACTGGTGTTCGATTTTACAGCTGATTATCTTCCATTAGTCTATGAGTTGCCGAGCAGCGCAACAGAAGTAAGGATGCTCGAGTATAACTCCACAGTGGAGATTGTTTTGCAAGGGACAACTGTGGTTTCAGGGACACACCACCCCATACATCTCCATGGACACAGTTTCTATCTTGTTGGATGGGGATTTGGGAATTTCGATGAAAATAAGGACCCTTTACGCTATAATCTGGTGGATCCTCCCCTTCAGAATACCATATCTGTTCCTTCGGAAGGTTGGGTTGCAATTAGATTCGAGGCGTCCAACCCTGGAGTGTGGTTCATGCACTGCCATGTAGAACGCCATCTGACTTGGGGCATGGAAACTGCGTTCATAGTGAAAAATGGAGTGTGGTTCATGCACTGCCATGTAGAACGCCATCTGACTTGGGGTATGGAAACTGCGTTCATAGTGAAAAATGGTAAACATCCAAAAGCTCAAATGCTGCCTCCTCCATCGACATGCCACCATGTTGAAGCTACAAAGAAATAA 1533 0.4403 MPRYPWTDGPEYITQCPIQPGSKFSQKIILSSEEGTIWWHAHSDWTRATVHGAIIVYPKNGTKYPFHKPNTEFLIILGQWWKIDVNAVRDEGLATGADPNASDALLINGQPGDLYPCSKSSTFKLTVDHGKTYLLRIINAALQEALFFSIAKHKMTVVGTDGSYTKPLTRDYITIFPGQTYDVLLEANQRPDHYYMAAITYSVAPKYQNFYDNTTTTAIVQYRGYYTPSSPPSLPYLPAYNDTNASVQVMADLRSLANPEHPCNVPLSTSTNLIYTVSVNSYPCINDSCAGANGTRFSSSINNISFDTPTVDILQAYYYNISGVYGDKFPSVPPLVFDFTADYLPLVYELPSSATEVRMLEYNSTVEIVLQGTTVVSGTHHPIHLHGHSFYLVGWGFGNFDENKDPLRYNLVDPPLQNTISVPSEGWVAIRFEASNPGVWFMHCHVERHLTWGMETAFIVKNGVWFMHCHVERHLTWGMETAFIVKNGKHPKAQMLPPPSTCHHVEATKK* 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1682 510 ProSitePatterns Multicopper oxidases signature 1. 463 483 IPR033138 -
Vvi18g1682 510 Gene3D - 284 460 IPR008972 -
Vvi18g1682 510 SUPERFAMILY Cupredoxins 66 258 IPR008972 -
Vvi18g1682 510 Pfam Multicopper oxidase 2 60 IPR011707 GO:0005507
Vvi18g1682 510 CDD CuRO_2_LCC_plant 75 222 IPR034285 -
Vvi18g1682 510 Gene3D - 461 510 IPR008972 -
Vvi18g1682 510 FunFam Laccase 2 63 249 - -
Vvi18g1682 510 Gene3D - 70 258 IPR008972 -
Vvi18g1682 510 SUPERFAMILY Cupredoxins 463 499 IPR008972 -
Vvi18g1682 510 SUPERFAMILY Cupredoxins 4 83 IPR008972 -
Vvi18g1682 510 SUPERFAMILY Cupredoxins 291 462 IPR008972 -
Vvi18g1682 510 ProSitePatterns Multicopper oxidases signature 2. 468 479 IPR002355 GO:0005507
Vvi18g1682 510 Pfam Multicopper oxidase 73 224 IPR001117 -
Vvi18g1682 510 Gene3D - 1 69 IPR008972 -
Vvi18g1682 510 CDD CuRO_3_LCC_plant 324 463 IPR034289 GO:0005507
Vvi18g1682 510 ProSitePatterns Multicopper oxidases signature 1. 438 458 IPR033138 -
Vvi18g1682 510 ProSitePatterns Multicopper oxidases signature 2. 443 454 IPR002355 GO:0005507
Vvi18g1682 510 Pfam Multicopper oxidase 353 462 IPR011706 GO:0005507|GO:0016491
Vvi18g1682 510 NCBIfam laccase 3 463 IPR017761 GO:0046274|GO:0048046|GO:0052716
Vvi18g1682 510 PANTHER MULTI-COPPER OXIDASE 2 463 IPR045087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1682 Vvi-Chr18 22269791 22273738 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1682 K05909 - vvi:100256018 976.081