Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1681 ATGGATGACCAGCTCAGAAGAGGGCAAGAGATCTCTCCAGCACTTGTAAAAGCCATCGAAGAGTCCAGATTCTCCGTCATCGTTTTCTCTAAAAACTATGCTTCTTCAACATGGTGTCTGGAGGAACTTGTCAAGATTATTGACTGCACCATGGCGATGGGACATGCAGCTTTACCAGTTTTCTACAATATGGATCCCTCTCATGTGAGGAAACAGACAGGGAGTTTTGCACAAGCATTTGCTAAGCATGAAGAGGTTTATAAGGAGCAGATGGAGAAAGTGATCAAGTGGAGAGTGGCTTTGACAGAAGCTGCCAATATTTCTGGATGGGATTCTCGAGCTAGGCATGGGGTGACCATGCCTAGATATCCATGGACAGATGGTCCCGAGTATATCACACAATGCCCAATTTAG 414 0.4541 MDDQLRRGQEISPALVKAIEESRFSVIVFSKNYASSTWCLEELVKIIDCTMAMGHAALPVFYNMDPSHVRKQTGSFAQAFAKHEEVYKEQMEKVIKWRVALTEAANISGWDSRARHGVTMPRYPWTDGPEYITQCPI* 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1681 137 PANTHER TMV RESISTANCE PROTEIN N-LIKE 2 115 - -
Vvi18g1681 137 SMART till_3 1 107 IPR000157 GO:0007165
Vvi18g1681 137 SUPERFAMILY Toll/Interleukin receptor TIR domain 3 110 IPR035897 -
Vvi18g1681 137 ProSiteProfiles TIR domain profile. 1 132 IPR000157 GO:0007165
Vvi18g1681 137 Gene3D - 1 123 IPR035897 -
Vvi18g1681 137 Pfam TIR domain 2 108 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1681 Vvi-Chr18 22245173 22255585 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1681 1 112 Miscellaneous Gene Families AT5G44900 32.143 2.89e-17 73.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1681 - - vri:117905593 221.09