Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1680 ATGATTTTTTTTATTTTACTATTTACTTTCTATTTCACACGGGATGAGGAAATATTTTCTCCTAATGGCGTCATTGAAGGTATTTTCATCATTAGGGATGACATGAAACAGAGTCATGGTTGTGGATTTGTTAAGCTTCCTAATAGAGATATGGCTGGCAGTGGCAGCAATAAATGCACTAAGTGGAAATTACGTGATGAGGGGTTGTGA 210 0.3619 MIFFILLFTFYFTRDEEIFSPNGVIEGIFIIRDDMKQSHGCGFVKLPNRDMAGSGSNKCTKWKLRDEGL* 70
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1680 69 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 16 53 IPR000504 GO:0003723
Vvi18g1680 69 Gene3D - 13 65 IPR012677 -
Vvi18g1680 69 SUPERFAMILY RNA-binding domain, RBD 17 52 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1680 Vvi-Chr18 22217638 22217847 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1680 - K13207 vri:117918207 68.1662