Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1674 ATGAAGATCCCTAAGAAAGTTAAATCTAAGAATAGTGTGGCAACTGCATCTTTCTTTGGTTTAAGATCCCTAAGAAAGTTAAATCTAAGTGATTGCCACATATTGGAAGGAGCAATTCCCAATGACTTTAGCTCTCTGTGCTCATTGGAATATTTAGATCTGAGCAGAAACAATTTTGTTACTCTACCTGCACGCCTCAATCAACTTTCACAGCTCAAAGGCCTTAGGTTGGGTTGTTGCAAGAGGCTTCAATCATTACCAGAGCTTCCATCAAGTATAGAAGAAATAGATGCCCATGATGGCACAGTTATGGAAAACATTTTGTGTCCATCAAGTGTCTACAGATCCAAGGAATGTGGGGGCCTCCGATTCACATTTTCTAATTGCTTCAGACTGTCTGAGAATGAAAGCAGCAACTTTGTGGCAGCTACATTAAGGGAAATGCAAAGTCTGGCAAATAAATTACCAAGATTTCAATTCCCAATTCAGGTGAGGGAAGCTTCATATAAAAGGCTTTGTAGCACCAAGAACATCTTAACAGTAAATGGAAAATTTCCGGGACCAACCATATATGCTACGAAAGGAGAGACGATCATTGTCGACGTTTATAACAAGGGAAATGAAAACATCACCATTCACTGGCATGGGGTGACCATGCCTAGATATCCATGGACAGATGGTCCCGAGTATATCACACAATGCCCAATTCGGCCAGGGTCAAAGTTTACACAGAAGATCATCCTTTCCACTGAAGAAGGCACTCTATGGTGGCATGCTCACAGTGATTGGACCCGAGCCACTGTTCATGGAGCTATAATTATCTATCCCAAGAATGGAACCAAGTATCCTTTTCACAAACCTGATAGAGAGGTCCCTATCATATTAGGAGAATGGTGGAAGAATGATGTGAATGCGGTTCGAGATGAAGGGCTTGCAACCGGAGGTGACCCCGACCCCTCTGATGCTTTATTGATAAATGGACAACCCGGTGATCTATATCCATGCTCAAAATCAGTATACAACTTTCCCTTTCTAATTGCAGACACATTCAAGCTAACGGTGGATCATGGAAAGACCTATCTACTTCGCATAATCAATGCTGCCTTGCAAGAGGCTCTCTTCTTCTCCATTGACAAGCATAAAATGACAGTGGTTGGAACAGATGGTAGCTACACGAAACCATTGACACGAGATTTTATCACAATATTTCCTGGCCAAACCTATGATGTCTTACTAGAAGCTAACCAACGCCCGGATCACTATTACATGGCGGCTATAACTTATTCTGTTGCCCCGAAATATCAAGACTTTTATGATAACACAACCACCACAGCTATTGTACAATACAACGGATACTACACTCCATCTTCACCTCCCTCCTTGCCTTATCTTCCTGCATACAATGACACAAATGCATCCGTTCAGGTCATGGCCGGCCTCCGAAGCTTAGCAAATGCGGAACATCCTTGCAATGTCCCATTGAGCACGAGCACTAACCTGATTTACACTGTTTCTGTAAACTCGTACCCATGCGTCAATAATTCATGTGCAGGGGCCAATGGGACGCGATTCTCCTCAAGTATAAACAACATAAGCTTCCATACCCCTACAGTTGACATACTGCAAGCTTACTATTATAACATCAGTGGTATATATGGAGATAAATTTCCTAGTGATCCACCACTGGTGTTCGATTTTACAGCTGATTATCTTCCATTAATCTATCAGTTGCCGAGCAGCGGAACAGAAGTAAGGGTGCTCGAGTATAACTCCACAGTGGATATTGTTTTTCAAGGGACAAATGTGCTTGCAGCGACACACCACCCCATGCATCTCCATGGATACAGTTTCTATGTTGTTGGATGGGGATTTGGGAATTTCGATGGAAATAAGGACCCTTTGCGCTATAATATGGTGGATCCTCCCTTTCAGAATACCATCTCTGTTCCTTCGAATGGTTGGGTTGCAATCAGATTCGAGGCATCCAACCCTGGAGTGTGGTTCATGCACTGCCATGTAGAACGCCATCTGACTTGGGGCATGGAAACTGCGTTCATAGTGAAAAATGGTAAACACCCGGAAGCTCAAATGTTGCCTCCTCCGTCGGACATGCCACCATGTTGA 2124 0.4327 MKIPKKVKSKNSVATASFFGLRSLRKLNLSDCHILEGAIPNDFSSLCSLEYLDLSRNNFVTLPARLNQLSQLKGLRLGCCKRLQSLPELPSSIEEIDAHDGTVMENILCPSSVYRSKECGGLRFTFSNCFRLSENESSNFVAATLREMQSLANKLPRFQFPIQVREASYKRLCSTKNILTVNGKFPGPTIYATKGETIIVDVYNKGNENITIHWHGVTMPRYPWTDGPEYITQCPIRPGSKFTQKIILSTEEGTLWWHAHSDWTRATVHGAIIIYPKNGTKYPFHKPDREVPIILGEWWKNDVNAVRDEGLATGGDPDPSDALLINGQPGDLYPCSKSVYNFPFLIADTFKLTVDHGKTYLLRIINAALQEALFFSIDKHKMTVVGTDGSYTKPLTRDFITIFPGQTYDVLLEANQRPDHYYMAAITYSVAPKYQDFYDNTTTTAIVQYNGYYTPSSPPSLPYLPAYNDTNASVQVMAGLRSLANAEHPCNVPLSTSTNLIYTVSVNSYPCVNNSCAGANGTRFSSSINNISFHTPTVDILQAYYYNISGIYGDKFPSDPPLVFDFTADYLPLIYQLPSSGTEVRVLEYNSTVDIVFQGTNVLAATHHPMHLHGYSFYVVGWGFGNFDGNKDPLRYNMVDPPFQNTISVPSNGWVAIRFEASNPGVWFMHCHVERHLTWGMETAFIVKNGKHPEAQMLPPPSDMPPC* 708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1674 707 ProSitePatterns Multicopper oxidases signature 1. 665 685 IPR033138 -
Vvi18g1674 707 Pfam Multicopper oxidase 290 451 IPR001117 -
Vvi18g1674 707 NCBIfam laccase 160 707 IPR017761 GO:0046274|GO:0048046|GO:0052716
Vvi18g1674 707 SUPERFAMILY L domain-like 16 89 - -
Vvi18g1674 707 CDD CuRO_2_LCC_plant 291 449 IPR034285 -
Vvi18g1674 707 Gene3D - 286 486 IPR008972 -
Vvi18g1674 707 Gene3D Ribonuclease Inhibitor 8 111 IPR032675 -
Vvi18g1674 707 Gene3D - 133 276 IPR008972 -
Vvi18g1674 707 PANTHER MULTI-COPPER OXIDASE 152 695 IPR045087 -
Vvi18g1674 707 ProSitePatterns Multicopper oxidases signature 2. 670 681 IPR002355 GO:0005507
Vvi18g1674 707 SUPERFAMILY Cupredoxins 517 707 IPR008972 -
Vvi18g1674 707 SUPERFAMILY Cupredoxins 284 485 IPR008972 -
Vvi18g1674 707 Pfam Multicopper oxidase 164 278 IPR011707 GO:0005507
Vvi18g1674 707 Gene3D - 510 707 IPR008972 -
Vvi18g1674 707 SMART LRR_typ_2 46 69 IPR003591 -
Vvi18g1674 707 SMART LRR_typ_2 21 45 IPR003591 -
Vvi18g1674 707 Pfam Multicopper oxidase 576 690 IPR011706 GO:0005507|GO:0016491
Vvi18g1674 707 CDD CuRO_3_LCC_plant 551 690 IPR034289 GO:0005507
Vvi18g1674 707 SUPERFAMILY Cupredoxins 159 300 IPR008972 -
Vvi18g1674 707 CDD CuRO_1_LCC_plant 163 276 IPR034288 GO:0005507
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1674 Vvi-Chr18 22105717 22110945 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1674 14 107 Receptor kinase-like Gene Family AT5G40170 36.842 3.10e-07 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1674 K05909 - vvi:100855245 1119.76