Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1672 ATGGGATCTGGAATAGCAACAGCATTGATACTTAGTAATTATCCGGTGATCCTGAAGAAAGTAAATGAAAAGTTCTTACAAGCTGGGATTGGTAGAGTCCGAGCTAATTTGCAAAGCCGTGTCAAGAAAGAGGCAATGACAATCGAAACTGATGCTACTTCTGCAAGTGTTTCAGCAAGTTCCTAG 186 0.4086 MGSGIATALILSNYPVILKKVNEKFLQAGIGRVRANLQSRVKKEAMTIETDATSASVSASS* 62
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1672 61 Pfam 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain 1 57 IPR006176 GO:0006631|GO:0070403
Vvi18g1672 61 Gene3D - 1 61 - -
Vvi18g1672 61 PANTHER 3-HYDROXYACYL-COA DEHYROGENASE 1 50 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1672 Vvi-Chr18 22088821 22089006 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1672 1 49 Acyl Lipid Metabolism Gene Families AT3G06860 83.673 1.46e-22 86.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1672 K10527 - vvi:100244762 87.0409