Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1670 ATGCCTAGATATCCATGGACAGATGGTCCCGAGTATATCACACAATGCCCAATTCAGCCAGGGTCAAAGTTTACCCAGAAGATCATCCTTTCCACTGAGGAAGGCACTCTATGGTGGCATGCTCACAGTGACTGGACCCGAGCCACTGTTCATGGAGCTATAATCATCTATCCCAAGAATGGAACCAAGTATCCTTTTCACAAACCTAACGCAGAAGTCCCCATCATATTAGGAGAGTGGTGGAAGAGGGATGTGAATGAGGTTCGAGATCAAGGGCTTGCAACCGGAGGTGACCCCAACTCCTCTAATGCTTTATTGATAAATGGACAACCTGGTGATCTATATCCATGCTCAAAATCAGGCACATTCAAGCTAACGGTGGATCGTGGAAAGACCTATCTACTTCGCATAATCAATGCTGCCTTGCACGAGGCTCTCTTCTTCGGCATAGCCAAGCATAAAATGACAGTGGTTGGAACAGATGGTAGCTACACAAAACCATTGACACGAGATTATATCACAATATTTCCTGGCCAAACCTATGATGTCTTACTAGAAGCTAACCAACGCCCGGATCACTATTACATGGCGGCTATAACTTATTCTGTTGCCCCGAAATATCAAGACTTCTATGATAACACAACCACCACAGCTATAGTACAGTATAGGGGTTACTACACTCCATCTTCACCTCCCTCCTTGCCTCATCTTCCTGCATACAATGACACAGATGCATCGGTTCAAGTCATGGCCGGCCTCCGAAGCTTAGCAAATGAGGAACATCCTTGCAATGTCCCATTGAGCACGAGCACTAAGCTGTTTTACACTCTTTCTATGAACTCGTACCCATGCGTCAATGATTCATGTGCAGGACCAAATGGGACGCGGTTCTCCTCAAGTATAAACAACATAAGCTTCCATACCCCTACAGTTGACATACTAGAAGCTTACTATTATAACATCAGTGGTGTATATGGAAATAACTTTCCTAGCTTTCCACCACTAGTGTTCGATTTTACATATGATTATCTTCCATTAATCTATCAGTTGCCGAGCAGCGGAACAGAAGTAAGGGTGCTCGAGTATAACTCCACAGTGGAGATTGTTCTTCAAGGGACAGCCGTGCTTGCAGAGACACACCACCCTATGCATCTCCATGGATACAGTTTCTATGTTGTTGGATGGGGATTTAGGAATTTCGATGAAAATAGGGACCCTTTGCACTATAATCTGGTGGATCCTCCTCTTCAGAATACCATCTCTGTTCCTTCGAAAGGTTGGGTTGCAATCAGATTCAAGGCATCCAACCCTGGAGTGTGGTTCTTCCACTGCCATGTAGAACGCCATGTGACTTGGGGCATGGAAACTGCGTTCATAGTGAAAAATGGTAAACACCCAGAAGCTCAAATGCTGCCTCCTCCATCCGACATGCCACCATGTTGA 1443 0.4525 MPRYPWTDGPEYITQCPIQPGSKFTQKIILSTEEGTLWWHAHSDWTRATVHGAIIIYPKNGTKYPFHKPNAEVPIILGEWWKRDVNEVRDQGLATGGDPNSSNALLINGQPGDLYPCSKSGTFKLTVDRGKTYLLRIINAALHEALFFGIAKHKMTVVGTDGSYTKPLTRDYITIFPGQTYDVLLEANQRPDHYYMAAITYSVAPKYQDFYDNTTTTAIVQYRGYYTPSSPPSLPHLPAYNDTDASVQVMAGLRSLANEEHPCNVPLSTSTKLFYTLSMNSYPCVNDSCAGPNGTRFSSSINNISFHTPTVDILEAYYYNISGVYGNNFPSFPPLVFDFTYDYLPLIYQLPSSGTEVRVLEYNSTVEIVLQGTAVLAETHHPMHLHGYSFYVVGWGFRNFDENRDPLHYNLVDPPLQNTISVPSKGWVAIRFKASNPGVWFFHCHVERHVTWGMETAFIVKNGKHPEAQMLPPPSDMPPC* 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1670 480 SUPERFAMILY Cupredoxins 275 480 IPR008972 -
Vvi18g1670 480 PANTHER MULTI-COPPER OXIDASE 2 468 IPR045087 -
Vvi18g1670 480 Pfam Multicopper oxidase 72 224 IPR001117 -
Vvi18g1670 480 NCBIfam laccase 3 480 IPR017761 GO:0046274|GO:0048046|GO:0052716
Vvi18g1670 480 Pfam Multicopper oxidase 353 463 IPR011706 GO:0005507|GO:0016491
Vvi18g1670 480 SUPERFAMILY Cupredoxins 5 88 IPR008972 -
Vvi18g1670 480 CDD CuRO_2_LCC_plant 73 222 IPR034285 -
Vvi18g1670 480 Pfam Multicopper oxidase 2 60 IPR011707 GO:0005507
Vvi18g1670 480 Gene3D - 68 258 IPR008972 -
Vvi18g1670 480 Gene3D - 285 480 IPR008972 -
Vvi18g1670 480 SUPERFAMILY Cupredoxins 66 258 IPR008972 -
Vvi18g1670 480 CDD CuRO_3_LCC_plant 324 463 IPR034289 GO:0005507
Vvi18g1670 480 ProSitePatterns Multicopper oxidases signature 1. 438 458 IPR033138 -
Vvi18g1670 480 ProSitePatterns Multicopper oxidases signature 2. 443 454 IPR002355 GO:0005507
Vvi18g1670 480 Gene3D - 1 67 IPR008972 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1670 Vvi-Chr18 22077207 22079186 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1670 K05909 - vvi:100261086 1009.98