Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1669 ATGAAAGAATTACAGCAAAATAGGAAGAAAATTGAAGGAGTTGTGTTTAGGATAAGAGACGAGGCTTTTATTCCAAAAAAGATGTGGCTGATCATGAAGGTTTTCCTCTTACAAATTTTGGTGTTTCTACTTTTTGGTGGCGGCATCCATTGTCAAGCTTCAATCCGTCGGCTTACTTTTGTGGTGAAGGAAGCTTCATATACAAGGCTTTGTAGTACCAAGAACATGTTAACAGTAAATGGACAATTTCCAGGACCAACTATATATGCTAAGAAAGGAGAGACAATCATTGTTGATGTTTATAACAGGGGAAAAGAAAACGTCACCATTCACTGGCATGGGGTGACCATGCCTAGATATCCATGGACAGATGGTCCCGAGTATATCACACAATGCCCAATTCAGCCAGGGTCAAAGTTTACGCAGAAGATCATCCTTTCCACTGAGGAAGGCACTCTATGGTGGCATGCCCACAGTGACTGGACCCGAGCCACTGTTCATGGAGCTATAATCATCTATCCCAAGAATGGAACCAAGTATCCTTTTCACAAACCTAATGCAGAAGTCCCCATCATATTAGGAGAATGGTGGAAAAGGGATGTGAATGAGGTTCGAGATGAAGGGCTTGCAACCGGAGCAGACCCCAACTCCTCTGATGCTTTATTGATAAATGGACAACCCGGTGATCTATATCCATGCTCAAAATCAGGCACGTTCAAGCTAACGGTGGATCATGGAAAGACCTATTTACTTCGCATAATCAATGCTGCCTTGCACGAGGCTCTCTTCTTCGCCATAGCTAAGCATAAAATGACAGTGGTTGGAACAGATGGTAGCTACACGAAACCATTGACACGAGATTATATCACAATATTTCCTGGTCAAACCTTCGATGTCTTACTAGAAGCTAACCAACGCCCGGATCACTATTACATGGCGGCTATAACTTATTCTGTTGCCCCGAAATATCAAGACTTTTATGATAACACAACCACCACAGCTATTGTACAGTACAGGGGATACTACACTCCATCTTCACCTCCCTCCTTGCCTGATCTTCCTGCATACAATGACACAGATGCATCGGTTCAAGTCATGGCCGGCCTCCGAAGCTTAGCAGATGCGGAACATCCTTGCGATGTCCCATTGAGCACGAACACTAACCTGTTTTACACTGTTTCTATGAACTCGTACCCATGCGTCAATAATTCATGTGGAGGGGCCAATGGGACGCGGTTCTCCTCAAGCATAAACAACATAAGCTTCGATTTCCCTACAATTGACATACTGGAAGCTTACTATTATAACATCAGTGGTGTATATGGAAATAACTTTCCTAGCTTTCCACCACTGGTGTTCGATTTTACATATGATTATCTTCCATTAGTCTATCAGTTGCCGAGCACCGGAACAGAAGTAAGGGTGCTCGAGTATAACTCCACAGTGGAGATTGTTCTTCAAGATACAGCCGTGCTTGCAGAGACACACCACCCCATGCATCTCCATGGATACAGTTTCTATGTTGTTGGATGGGGATTTGGGAATTTCGATGAAAATAGGGACCCTTTGCGCTATAATCTGGTGGATCCTCCCTTTCAGAATACCATCTCTGTTCCATCGAAAGGTTGGGTTGCAATCAGATTCGAGGCATCCAACCCTGGAGTGTGGTTCCTGCACTGCCATGTAGAACGTCATCTGACTTGGGGCATGGAAACTGCGTTCATAGTGAAAAATGGTAAACACCCAGAAGCTCAAATGTTGCCTCCTCCATCCGACATGCCTCCATGTTGA 1791 0.4422 MKELQQNRKKIEGVVFRIRDEAFIPKKMWLIMKVFLLQILVFLLFGGGIHCQASIRRLTFVVKEASYTRLCSTKNMLTVNGQFPGPTIYAKKGETIIVDVYNRGKENVTIHWHGVTMPRYPWTDGPEYITQCPIQPGSKFTQKIILSTEEGTLWWHAHSDWTRATVHGAIIIYPKNGTKYPFHKPNAEVPIILGEWWKRDVNEVRDEGLATGADPNSSDALLINGQPGDLYPCSKSGTFKLTVDHGKTYLLRIINAALHEALFFAIAKHKMTVVGTDGSYTKPLTRDYITIFPGQTFDVLLEANQRPDHYYMAAITYSVAPKYQDFYDNTTTTAIVQYRGYYTPSSPPSLPDLPAYNDTDASVQVMAGLRSLADAEHPCDVPLSTNTNLFYTVSMNSYPCVNNSCGGANGTRFSSSINNISFDFPTIDILEAYYYNISGVYGNNFPSFPPLVFDFTYDYLPLVYQLPSTGTEVRVLEYNSTVEIVLQDTAVLAETHHPMHLHGYSFYVVGWGFGNFDENRDPLRYNLVDPPFQNTISVPSKGWVAIRFEASNPGVWFLHCHVERHLTWGMETAFIVKNGKHPEAQMLPPPSDMPPC* 597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1669 596 CDD CuRO_1_LCC_plant 59 174 IPR034288 GO:0005507
Vvi18g1669 596 Gene3D - 55 186 IPR008972 -
Vvi18g1669 596 Coils Coil 1 21 - -
Vvi18g1669 596 CDD CuRO_3_LCC_plant 440 579 IPR034289 GO:0005507
Vvi18g1669 596 Gene3D - 187 374 IPR008972 -
Vvi18g1669 596 Gene3D - 400 596 IPR008972 -
Vvi18g1669 596 PANTHER MULTI-COPPER OXIDASE 58 584 IPR045087 -
Vvi18g1669 596 NCBIfam laccase 53 596 IPR017761 GO:0046274|GO:0048046|GO:0052716
Vvi18g1669 596 ProSitePatterns Multicopper oxidases signature 2. 559 570 IPR002355 GO:0005507
Vvi18g1669 596 SUPERFAMILY Cupredoxins 53 198 IPR008972 -
Vvi18g1669 596 Pfam Multicopper oxidase 469 579 IPR011706 GO:0005507|GO:0016491
Vvi18g1669 596 CDD CuRO_2_LCC_plant 189 338 IPR034285 -
Vvi18g1669 596 SUPERFAMILY Cupredoxins 407 596 IPR008972 -
Vvi18g1669 596 ProSitePatterns Multicopper oxidases signature 1. 554 574 IPR033138 -
Vvi18g1669 596 SUPERFAMILY Cupredoxins 182 375 IPR008972 -
Vvi18g1669 596 Pfam Multicopper oxidase 62 176 IPR011707 GO:0005507
Vvi18g1669 596 Pfam Multicopper oxidase 188 340 IPR001117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1669 Vvi-Chr18 22026785 22029550 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1669 K05909 - vvi:100261103 1176.77