Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1658 ATGGCTTCTGCGGACCGAAATTACGATGTATTCTTGAGTTTTAGAGGTGAAGACACCCGCAAAAATTTCAGTGATCATCTCTACACCACTTTGATTGCAAATGGAATTCATACTTTCAGAGACAGTGAAGAACTTGATAAAGGAGGAGATATTGCATCTGAACTCTCAAGAGTAATTCAGAAATCAAGGATTTTCATTATCATATTCTCAAGAAATTATGCTACTTCGAAATGGTGTTTAAATGAACTTGTAAAAATCACTGAGCGTATGACACAGAAAGAGTCAACAATCCATCCTGTTTTCTACCATGTGAATCCATCAGAAGTGCGACATCAATCCGGAAGTTATGGAGAGGCCTTTTCCAACTATGAAAAGGATGCAGACCTAGAGAAGGAGAACATAGTGAAGTGGAGGGCTGCCTTGACACAAGTAGGCAATCTATCCGGATGGCATGTGGATAACCAGTAA 468 0.3953 MASADRNYDVFLSFRGEDTRKNFSDHLYTTLIANGIHTFRDSEELDKGGDIASELSRVIQKSRIFIIIFSRNYATSKWCLNELVKITERMTQKESTIHPVFYHVNPSEVRHQSGSYGEAFSNYEKDADLEKENIVKWRAALTQVGNLSGWHVDNQ* 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1658 155 SMART till_3 7 147 IPR000157 GO:0007165
Vvi18g1658 155 PANTHER TMV RESISTANCE PROTEIN N-LIKE 4 154 - -
Vvi18g1658 155 ProSiteProfiles TIR domain profile. 6 155 IPR000157 GO:0007165
Vvi18g1658 155 Pfam TIR domain 7 148 IPR000157 GO:0007165
Vvi18g1658 155 FunFam Disease resistance protein (TIR-NBS-LRR class) 4 155 - -
Vvi18g1658 155 SUPERFAMILY Toll/Interleukin receptor TIR domain 4 150 IPR035897 -
Vvi18g1658 155 Gene3D - 4 155 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1658 Vvi-Chr18 21751113 21751580 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1658 10 149 Miscellaneous Gene Families AT1G57830 37.857 1.06e-25 94.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1658 - - vvi:100266302 317.775