Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1652 ATGGCTTCCATATGCAACCTAATATCCTCTTCTTCTACATCTGTCCTTCGATGGAATTATGATGTTTTCTTGAGTTTTAGAGCTGAAGATACTCGTTACAAGTTTACTGATCATCTGTATGCAGCTTTGCGTAATAGAAGCATTCGAACTTTTAGAGATGATAAACTTAAGAGAGGAGAAGAGATTGCACCGGAACTCTTGAAAGTTATTGAAGAATCAAGGCTTTCCATAGTCGTTTTTTCAGAAAATTATGCTAGTTCTAGATGGTGTTTAGATGAGCTGGTCAAGATCATGGAGTGTAGACAAAAAATTAGACAAATTGTGGTACCTATTTTCTACCATGTGGATCCGTCCGATCTTCGGAAACAAAAGGGGAGTTTTGGAAAAGCTTTTGCCAGCTATGAAAGACATGGAAGGGATTCCAAGGAGAAGATACAAAGGTGGAGAGCTGCATTGACTGAAGCAAGTAATCTATCTGGATGGCGGCTCTTTGAAGGGTGA 501 0.3932 MASICNLISSSSTSVLRWNYDVFLSFRAEDTRYKFTDHLYAALRNRSIRTFRDDKLKRGEEIAPELLKVIEESRLSIVVFSENYASSRWCLDELVKIMECRQKIRQIVVPIFYHVDPSDLRKQKGSFGKAFASYERHGRDSKEKIQRWRAALTEASNLSGWRLFEG* 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1652 166 SMART till_3 19 158 IPR000157 GO:0007165
Vvi18g1652 166 ProSiteProfiles TIR domain profile. 18 166 IPR000157 GO:0007165
Vvi18g1652 166 Pfam TIR domain 19 156 IPR000157 GO:0007165
Vvi18g1652 166 FunFam Disease resistance protein (TIR-NBS-LRR class) 16 165 - -
Vvi18g1652 166 SUPERFAMILY Toll/Interleukin receptor TIR domain 9 161 IPR035897 -
Vvi18g1652 166 PANTHER TMV RESISTANCE PROTEIN N-LIKE 11 163 - -
Vvi18g1652 166 Gene3D - 14 165 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1652 Vvi-Chr18 21715486 21715986 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1652 1 165 Miscellaneous Gene Families AT1G57830 38.182 8.87e-32 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1652 - - vvi:104882704 320.857