Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1646 ATGACGGCTGGCAGAGCCACTTGTATTGTCTTTTCCGATGATGACTTGCCACCGGAGGGCTCAGACCACACTCGCCCGCTCTACATATCTGTCGGTTGTTCAGGCCGCCGAGTTCCATCTGTCCTTTTGGACAATGGCTCGGCCCTGAACGTATGTCCTCTTGCCACTGCCATCGCCCTTGGATACGCTCCTTCTGATTTCGGTCCCTCTACTCAGACCGTTCGCGCATATGACAGTACTCGGAGGGAGGTCATGGGTACATTGGAGATCGAGTTACTGATCGGTCCGGCCACTTTTGTCGCTATATTCCAGGTTTTAAGGATTCCTACATCCTTTAACCTGCTTTTGGGCCGACCATGGATCCACCGAGCCGGGGCCATTCCTTCTTCCCTTCATCAGAAGGTGAAGTTTATTCACGATGGTCAGGTCGTCGTGGTGCAGTCTGTGGGAGACATGTTCATTGCTGCCGAGCCTATGCTCGAGATTAGTCACACTGATGATGATCTTTTTCTGACTGGATTCACCTTCGATGAGGTGCAGACCGTAGAGATAGAGGATTTCTGCCGAGATTTTGTGGCCATGTCCTTTGACCAGCATGGGAGCACAGTGGTGCTCGATATTATGCGGAGCATGTCCTATCTACCCGGCATGGGGTTGGGTCGACGTCAGCATGGACCGAGCGAGTTCATAGCCATCCCTGATCACGACGTACCGTTCGGACTCGGGTTCATCCCCACTGAGGCCGATTATCTTTACATGGCGCGTTTGCACAAGGAGAGAGTGAGGGCTCGACTGACCCACACACCCTTCTACTATCCTATTCGCCCATACACCAGGAGCTTAGCAGATTACTTTGTGAGGGCATCGGAGCCGCACGCACCATCTGACGGGATCGTCGGAGGACTTAGCACCACCCAGGAGGCCGAGCTTCAGCGCCTTGTCCAGCAGTTACGATTGAGAGATGGAGCCCCGGGTCCTTCGACTTCTGTGTTGATTGCTCCTTCTTCTCCGGATCGCACGAGCCTTATGACGCTTTGTTTCCCTGATGAGACCGATGAGCATGGGACCTTTGCTGAGGTTGAGGACATAGTGGATGGAGCCGTGCCGCGTGACGAGTACGTTGATGAGATGCTAGCGATGAGCTTGAGCCAGACCGAGGAGATGGCCCCGCCGGAGCTCGCTTCACCTTTTGATCTCTTTGGGGTGTCCGTCCTCGAGATCGCCGAGGAGATCCAGGGTGCCCCCACTCCAGAGGTCGTCGAGGATGTTATAGTTGCTGTTGATTTGTTTGATGGCCCTGTTGGCCTAGTTGAGGGAGCGTCCGACCTTGTGGACCCACCTCTCACCTTTGATGTTTTATCGGGATTTGTCTCCCGTCATGACTATGTTTCTGACTTTTCATCTATGGATTTGAGCACCTTTGAGTATTTGTCTGTCTCTCATGTCATTGATTTATCTGCACCATCTTCACCCACATCACAGATTTTTGACATTGATGATGAGATTGCGCAGCACGACTCAGACGATGACTCGTCTTCTGCTTCCGATTCAGACCCCGTTGATCAGAGAGTTTCACCTGCTGTAGGGGACACCGAGATTGTTGACTTTGGCACGACAGATCAGCCTAGGGAGTTGAGGATCGGATCGGATTTGTCTACAGATGAGAGAGATAGCCTCATCCAGCTACTCAGATCCTACTTGGACGTCTTCGCATGGTCCTATGAGGACATGCCAGGCCTTGATCCATCTATCGTCCAGCATCGTTTGCCACTTCTGCCCCAGGCCAGACCGGTTAAGCAGAAGTTGAGACGATTGCACCCTCGTTGGAGCTTGCAGGTGAAAGAGGAGATCCAGAAGCAGCTCAGTGTAGGATTCTTATCAGTGGTTGAGTACCCGAAGTGGCTGGCCAATGTCGTCCCTGTTCCCAAGAAGGACGGCAAGGTGAGAGTCTGTGTTGATTTCCGAGATCTCAACAAGGCCAGTCCTAAGGACGATTTTCCTCTTCCACACATCGACATGCTAGTTGACAGTACGGCAGGTCATTCGATGTTGTCCTTTATGGACTGA 2067 0.5254 MTAGRATCIVFSDDDLPPEGSDHTRPLYISVGCSGRRVPSVLLDNGSALNVCPLATAIALGYAPSDFGPSTQTVRAYDSTRREVMGTLEIELLIGPATFVAIFQVLRIPTSFNLLLGRPWIHRAGAIPSSLHQKVKFIHDGQVVVVQSVGDMFIAAEPMLEISHTDDDLFLTGFTFDEVQTVEIEDFCRDFVAMSFDQHGSTVVLDIMRSMSYLPGMGLGRRQHGPSEFIAIPDHDVPFGLGFIPTEADYLYMARLHKERVRARLTHTPFYYPIRPYTRSLADYFVRASEPHAPSDGIVGGLSTTQEAELQRLVQQLRLRDGAPGPSTSVLIAPSSPDRTSLMTLCFPDETDEHGTFAEVEDIVDGAVPRDEYVDEMLAMSLSQTEEMAPPELASPFDLFGVSVLEIAEEIQGAPTPEVVEDVIVAVDLFDGPVGLVEGASDLVDPPLTFDVLSGFVSRHDYVSDFSSMDLSTFEYLSVSHVIDLSAPSSPTSQIFDIDDEIAQHDSDDDSSSASDSDPVDQRVSPAVGDTEIVDFGTTDQPRELRIGSDLSTDERDSLIQLLRSYLDVFAWSYEDMPGLDPSIVQHRLPLLPQARPVKQKLRRLHPRWSLQVKEEIQKQLSVGFLSVVEYPKWLANVVPVPKKDGKVRVCVDFRDLNKASPKDDFPLPHIDMLVDSTAGHSMLSFMD* 689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1646 688 SUPERFAMILY DNA/RNA polymerases 584 688 IPR043502 -
Vvi18g1646 688 CDD retropepsin_like 29 122 - -
Vvi18g1646 688 Gene3D HIV Type 1 Reverse Transcriptase, subunit A, domain 1 577 683 - -
Vvi18g1646 688 Gene3D Acid Proteases 16 145 IPR021109 -
Vvi18g1646 688 PANTHER TRANSPOSON TY3-I GAG-POL POLYPROTEIN 543 688 - -
Vvi18g1646 688 MobiDBLite consensus disorder prediction 504 535 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1646 Vvi-Chr18 21578172 21580238 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1646 - - vvi:109123372 1220.68