Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1632 ATGGCTTCAGCCTCTACTTCAACCCATGTAGGGATTTATGATGTTTTCTTAAATTTTAGGGGAGCAGACACCCGCTACCACTTCACTGATCACCTCTACTCCGAACTGAGAAAGAATGACGTACGCACCTTTAGAGATGACGAAGAGCTTGAGAGAGGAGATGTGATTGCTCCAGGACTCCTCAAAGCTATTGAGCAATCACGGATTTCTATTGTGGTTTTCTCAGAAAACTATGCCCAATCTAGATGGTGTTTGGACGAACTGGTCAAGATCATCGAGTGTAGGACAGAAAGGGAACAAATAGTTCTGCCAGTTTTCTACCATGTGGATCCTTCCCATGTGCGGAAGCAAATGGGGAGTTATGGAGAGGCATTTGCAGATCATGAAAAGGATGCTGATCTGAAGAAAAGGGAGAAGATACAGAAGTGGAGGACTGCCTTGACAGAAACAAGCAATCTATCTGGCTGGCGTCTGCTTGATAATCAAGAGCATTCAGAAGAATTTATTGCAGACGCCATATTGTAG 525 0.4419 MASASTSTHVGIYDVFLNFRGADTRYHFTDHLYSELRKNDVRTFRDDEELERGDVIAPGLLKAIEQSRISIVVFSENYAQSRWCLDELVKIIECRTEREQIVLPVFYHVDPSHVRKQMGSYGEAFADHEKDADLKKREKIQKWRTALTETSNLSGWRLLDNQEHSEEFIADAIL* 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1632 174 FunFam Disease resistance protein (TIR-NBS-LRR class) 10 173 - -
Vvi18g1632 174 SMART till_3 12 153 IPR000157 GO:0007165
Vvi18g1632 174 Pfam TIR domain 13 170 IPR000157 GO:0007165
Vvi18g1632 174 SUPERFAMILY Toll/Interleukin receptor TIR domain 5 156 IPR035897 -
Vvi18g1632 174 Gene3D - 11 174 IPR035897 -
Vvi18g1632 174 ProSiteProfiles TIR domain profile. 11 174 IPR000157 GO:0007165
Vvi18g1632 174 PANTHER TMV RESISTANCE PROTEIN N-LIKE 4 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1632 Vvi-Chr18 21209915 21218637 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1632 15 162 Miscellaneous Gene Families AT1G57830 37.838 3.35e-28 101
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1632 - - vvi:100246262 332.798