Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1626 ATGCAAGGGTCAATCCAGGATGACATTTGCTGGTTGTACTCACTGGAGGTATTAAATCTCACTAACTGCAATCTAATTGATGACAGAATCACAGACGAAATTTGCCACCTATTATCACTGCAAGTATTATATCTAAGCAGAAACAACATTAGCAAGATACCTGCTGGAATTAGTCAACTTTCGAAGCTGCGAGTGCTTGGATTGAGTCACTGCAAGATGGCTGTCGAAATTCCAGAGCTTCCATCAAGTCTACGGTCCATAGATGTACATGATTGTACAGGCCTGAAAACATTATCAAATCCATCAAGTCTACTTTGGGCTTCTCTCTTCAAATGCTTCAAATCAGCTATTCAGGTACTATATGTTTTCATGTCACTTGACTTTTATACAGGCATGGAATTTACATGCAATTTTTGTGCAGGATTTGGAATGTGGAAATCATTGGTCTGA 450 0.3911 MQGSIQDDICWLYSLEVLNLTNCNLIDDRITDEICHLLSLQVLYLSRNNISKIPAGISQLSKLRVLGLSHCKMAVEIPELPSSLRSIDVHDCTGLKTLSNPSSLLWASLFKCFKSAIQVLYVFMSLDFYTGMEFTCNFCAGFGMWKSLV* 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1626 149 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 57 12 98 - -
Vvi18g1626 149 SUPERFAMILY L domain-like 3 107 - -
Vvi18g1626 149 ProSiteProfiles Leucine-rich repeat profile. 39 60 IPR001611 GO:0005515
Vvi18g1626 149 Gene3D Ribonuclease Inhibitor 1 138 IPR032675 -
Vvi18g1626 149 SMART LRR_typ_2 37 60 IPR003591 -
Vvi18g1626 149 Pfam Leucine rich repeat 14 72 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1626 Vvi-Chr18 21155002 21155451 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1626 3 148 Receptor kinase-like Gene Family AT1G75640 28.834 3.15e-09 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1626 - - vri:117907625 202.216