Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1612 ATGAATCTGTGCTCCTTGTTGGGTGAAGCTCTTGGAGATTTTTCAATTTGCAAACATTACATCAAATTCAAGTTGCTTGACCAAGACGTATCTATAAATATTGATCCCTTGCTGGCTTCATCATTAAGGAAACATGAAGCTAGGATTGAAGAAATAAAGAAAGTATATTGTGCCTCTTTGTTTGAGGGGCAAATCAACAACTCATTTTGCATTTTTCCAAAGGTGAAGTTAGTTGGCTATGGTCATGGAAGTACACCAGTTTATCTCAATGTGTACGACTTGACACCTATGAATGGTTATGCCTATTGGGTCGGCCTTGGGATTTTTCACTCTGTTGTAGAAGTTCATGGTGTAGAATATGCATTTGGAGCTCATGACTACCTAACTAATAGTGTTATTGAGGTTGAACCCTTCTAG 417 0.3813 MNLCSLLGEALGDFSICKHYIKFKLLDQDVSINIDPLLASSLRKHEARIEEIKKVYCASLFEGQINNSFCIFPKVKLVGYGHGSTPVYLNVYDLTPMNGYAYWVGLGIFHSVVEVHGVEYAFGAHDYLTNSVIEVEPF* 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1612 138 Pfam PPPDE putative peptidase domain 86 137 IPR008580 GO:0008233
Vvi18g1612 138 PANTHER DESUMOYLATING ISOPEPTIDASE 83 137 IPR008580 GO:0008233
Vvi18g1612 138 Gene3D PPPDE domains 81 138 IPR042266 -
Vvi18g1612 138 ProSiteProfiles PPPDE domain profile. 85 138 IPR008580 GO:0008233
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1612 Vvi-Chr18 20713126 20713579 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1612 K22763 - vvi:100245551 129.798