Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1609 ATGGGCCGAAGCAGCAAAACCAGGAAGCACAGACACTCGTCGTCCGACGACGACGACGGTGATGACACGGCCAATTCTTCTTCCTCGTCACCATCCCCGTCAACCTCTCACAAGCGACGCCGCCGGAGAAAAGAGAGAAACGAACGTTCCAAGAGGAAGAGAGAGTCGAAGCATCGGAGATCGCGTAGAGACCGCAGAAAACGGGTTTCTGAGTCCGAAGATGGTTCCAGATCTTCCACCGACGAAGATTCGGAGCTCCGGAGGTCTAGGGTCGAGCCCAGGGCCGTTGTGAGGTATATTTTGAAGAAGTTCCCTGGCGTGGCCACTGATTTGGAGCAGCTTCTGCAAATGATTGATGATGGGCAAGCGGTCGACATCAAGGGATTATCGGAAAGATCTTTGATAAAGCATCTAAAGAAGTTATTCCTCTCATTAAACCTCAAGGAAAATGGTGATAGAGTTTTTCTACTGCCTTCAAAAGTTCGTCCTACTTTGGAGGTTGTTGGACCCATGCTTCAGTCTAACATAGAACCTAAAGAGGAGCAGCTTGGTCATGTGCCTAATGATAAACTTTCATTACCACCTGAGGTAGAAGGAGGACAAGTGCTGGATGAGAATGATATGGTAGTACAGTGTCCAAAGGTTGATGCTTCACCTCCAAAAAGAAGGGTGATTGGCCCTGAAATGCCATCTGCTGAATTACTTGCTGCTGCAGCCAAATTAACAGAAGCAGGGGCTGAGCTAAGGGAAGTGGAATTTGATGAAGATAGTGAAATATTTATAGGACCTCCTCCACCTGCTGTGGTTGCTGAAGCTGAATCAGCAAATGAAGCTGAGCGGTTTGAAGAGGTCACTAGGATTATGGGCGTTGAGACTGACAGCCCATATGATGTTCTAGGAGTGAACCTAAATATGTCTGTTGACAACGTAAAGAAAAGGTACTGGAAGCTGTCTCTCATGGTGCATCCCGACAAATGCCCTCATCCTCAAGCTCATCAAGCATTCATCATATTGAATAAAGCTTTTAAAGATTTACAGGACCCAGATAAGCGAAAAGCACTGGATGAGAAAATTAAACTGAAGGAGGAACAGGAGGCATTTAAGGCGGAGTTGAAAGCCATGCGCGAGGCTGCACATTGGAGAAGATTGCAAGGTATATCCATGGAGGGGGATGATGAGCTCCTGGCAGACATGGAGGTGAAAGTAGAACCAAAAAGAGATGAGTGGATGACAACTCTACCTCCAGAAAGAAAACCCGGTATGACCATGCAGTCCACAAAGTTTAGCAGAAGCTCTAAGGAAGGACGTGGTGATACTAGTGTTTGGACTGATACTCCTTCAGACAGAGCTCAGAAAGCAAAGATCAATTATTTAGAAGCGTATAATGAGGCTGCAGCACTTGCTTCAAATGAAATAGAAAAGAAAAGAACAAGTAGTGATGCAGATTTGGTGGACAAATACAATAAAGCCAAACGATCAAAGTCATTGGTGCAGAAGCACCACGAAGAGGCTGCTAGTAAAGGGTCAAAGCGGAAAGCAAAGCAGCAGCCACAGCTGGAGAAAGAAGAATGGGTGGGACAACACCCTTGGAAACCTTGGGATCGTGAGAAGGACTTGACGGCTGGGCGGCAAAGTGTGAAATTGGATGCAGATAACATGGCTGAGGGTTTGGCTTCAAGGTTTTCTTCAGGAAACTTTCAAAGGAACTTCCTATAG 1716 0.4633 MGRSSKTRKHRHSSSDDDDGDDTANSSSSSPSPSTSHKRRRRRKERNERSKRKRESKHRRSRRDRRKRVSESEDGSRSSTDEDSELRRSRVEPRAVVRYILKKFPGVATDLEQLLQMIDDGQAVDIKGLSERSLIKHLKKLFLSLNLKENGDRVFLLPSKVRPTLEVVGPMLQSNIEPKEEQLGHVPNDKLSLPPEVEGGQVLDENDMVVQCPKVDASPPKRRVIGPEMPSAELLAAAAKLTEAGAELREVEFDEDSEIFIGPPPPAVVAEAESANEAERFEEVTRIMGVETDSPYDVLGVNLNMSVDNVKKRYWKLSLMVHPDKCPHPQAHQAFIILNKAFKDLQDPDKRKALDEKIKLKEEQEAFKAELKAMREAAHWRRLQGISMEGDDELLADMEVKVEPKRDEWMTTLPPERKPGMTMQSTKFSRSSKEGRGDTSVWTDTPSDRAQKAKINYLEAYNEAAALASNEIEKKRTSSDADLVDKYNKAKRSKSLVQKHHEEAASKGSKRKAKQQPQLEKEEWVGQHPWKPWDREKDLTAGRQSVKLDADNMAEGLASRFSSGNFQRNFL* 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1609 571 Coils Coil 350 377 - -
Vvi18g1609 571 Gene3D DnaJ domain 280 378 IPR036869 -
Vvi18g1609 571 MobiDBLite consensus disorder prediction 66 90 - -
Vvi18g1609 571 PANTHER DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN 6 571 - -
Vvi18g1609 571 MobiDBLite consensus disorder prediction 35 65 - -
Vvi18g1609 571 Coils Coil 458 478 - -
Vvi18g1609 571 ProSiteProfiles dnaJ domain profile. 294 358 IPR001623 -
Vvi18g1609 571 MobiDBLite consensus disorder prediction 410 447 - -
Vvi18g1609 571 SUPERFAMILY Chaperone J-domain 267 352 IPR036869 -
Vvi18g1609 571 Pfam Protein of unknown function (DUF3752) 414 562 IPR022226 -
Vvi18g1609 571 MobiDBLite consensus disorder prediction 1 90 - -
Vvi18g1609 571 MobiDBLite consensus disorder prediction 418 447 - -
Vvi18g1609 571 PRINTS DnaJ domain signature 314 329 IPR001623 -
Vvi18g1609 571 PRINTS DnaJ domain signature 330 350 IPR001623 -
Vvi18g1609 571 PRINTS DnaJ domain signature 296 314 IPR001623 -
Vvi18g1609 571 Pfam DnaJ domain 295 355 IPR001623 -
Vvi18g1609 571 SMART dnaj_3 293 350 IPR001623 -
Vvi18g1609 571 MobiDBLite consensus disorder prediction 490 544 - -
Vvi18g1609 571 CDD DnaJ 295 347 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1609 Vvi-Chr18 20620253 20633446 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1609 - - vvi:100255442 957.592