Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vvi18g1578 | ATGGCGAGCGAAGAAGAGAGCGCAGTGAAGGAGCCGTTGGATCTCATAAGACTTAGCCTCGACGAGCGTATCTACGTCAAGCTCCGCTCCGACCGTGAACTCCGAGGCAAACTTCATGCCTATGATCAGCATTTGAACATGATTCTTGGTGATGTTGAAGAAATTGTTACTACAGTAGAAATCGACGATGAAACTTATGAAGAAATTGTTCGAACGACAAGGCGGACAGTTCCATTTCTTTTTGTTCGAGGAGATGGTGTTATTTTGGTTTCTCCTCCACTGAGGACAGCTTGA | 294 | 0.4558 | MASEEESAVKEPLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVEIDDETYEEIVRTTRRTVPFLFVRGDGVILVSPPLRTA* | 98 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vvi18g1578 | 97 | SMART | Sm3 | 14 | 92 | IPR001163 | - | |
| Vvi18g1578 | 97 | SUPERFAMILY | Sm-like ribonucleoproteins | 11 | 93 | IPR010920 | - | |
| Vvi18g1578 | 97 | CDD | LSm3 | 11 | 92 | IPR034105 | GO:0000398|GO:0003723 | |
| Vvi18g1578 | 97 | PANTHER | U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM3 | 1 | 96 | IPR040002 | GO:0003723 | |
| Vvi18g1578 | 97 | Pfam | LSM domain | 16 | 92 | IPR001163 | - | |
| Vvi18g1578 | 97 | ProSiteProfiles | Sm domain profile. | 11 | 96 | IPR047575 | GO:0003723 | |
| Vvi18g1578 | 97 | FunFam | U6 snRNA-associated Sm-like protein LSm3 | 2 | 94 | - | - | |
| Vvi18g1578 | 97 | Gene3D | - | 2 | 94 | - | - |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vvi18g1578 | K12622 | - | vvi:100253870 | 190.274 |