Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1542 ATGGATCGGTACCAGAGAGTGGAGAAGCCGAGGCCTGAAACTCCGATCAACGAGAATGAGATTCGCATTACTGCTCAGGGCCGTATGAGGAACTACATTACTTATGCTACCACTCTCCTTCAGGATAAAGGATCTGATGAAATTGCTCTCAAAGCCATGGGCAGGGCAATCAACAAAACTGTGATGATTGCTGAACTAATTAAGAGAAGGATTGCTGGTCTCCATCAGAACACATCGATTGGTTCTACTGATATAACTGATATGTGGGAGCCACTAGAAGAAGGCCTTCTTCCTCTAGAAACCACTCGCCATGTTTCAGTGATAGCCATCACTTTGTCCAAAAAGGAGCTGGATATATCCTCCACAGGGTACCAACCACCAATTCCAGCTGATCAAGTGAGACCGTGGACTGAATATGATTATGAAGGAGAGGGCTCTCCTGCGATGAGGGGCAGAGGTCGTAGTGGCCGAGGAAGGGGTAGAGGTAGAGGGAATAATAACAATGGGATGGTAGAATACAATGGTGATGGTGGCTGGGATGGTGTGCGTGGGGGGTATGGTGGCAGAGCTCGAGGCCGTGGAAGAGGCCGTGGTTATCGTGGGCGTGGAAGAGGCTATGGTGGTGGAGATATGCAACAAGAAATGGGCGGTTACAATGACTATGGATCAGGGGCAGTGCCTGCTCAAGGCCGTGGTAAGCTCTTAGATTTATGTTCTGTGAAGTTTCTTTCTGCCCTTTAA 741 0.4872 MDRYQRVEKPRPETPINENEIRITAQGRMRNYITYATTLLQDKGSDEIALKAMGRAINKTVMIAELIKRRIAGLHQNTSIGSTDITDMWEPLEEGLLPLETTRHVSVIAITLSKKELDISSTGYQPPIPADQVRPWTEYDYEGEGSPAMRGRGRSGRGRGRGRGNNNNGMVEYNGDGGWDGVRGGYGGRARGRGRGRGYRGRGRGYGGGDMQQEMGGYNDYGSGAVPAQGRGKLLDLCSVKFLSAL* 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1542 246 SUPERFAMILY AlbA-like 16 129 IPR036882 GO:0003676
Vvi18g1542 246 Gene3D - 14 118 IPR036882 GO:0003676
Vvi18g1542 246 MobiDBLite consensus disorder prediction 187 211 - -
Vvi18g1542 246 Pfam Alba 19 83 IPR002775 GO:0003676
Vvi18g1542 246 PANTHER RIBONUCLEASE P SUBUNIT P25 1 232 - -
Vvi18g1542 246 FunFam DNA/RNA-binding protein Alba 1 15 117 - -
Vvi18g1542 246 MobiDBLite consensus disorder prediction 142 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1542 Vvi-Chr18 19508635 19516475 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1542 - - vvi:100265751 361.688