Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1540 ATGACGGAGCCTTCCAAAGTCATTCATGTTCGTAATGTGGGGCATGAAATATCAGAGAATGATTTGCTTCAGCTGTTCCAACCATTTGGCGTCATTACTAAGCTTGTGATGCTTCGTGCAAAAAATCAGGCTCTCCTCCAAATGCAAGATGTTCCCTCAGCTGCCAATGCAATGCAATTCTACACGAATGTTCAGCCAAGCATAAGGGGGAGGAACGTCTATGTTCAGTTCTCATCACATCAAGAACTAACAACAGTGGATCAGAATGCTCAAGGACGAGGAGATGAGCCTAATCGAATTCTCTTAGTTACAATTCATCACCTGCTATACCCTATAACAGTGGAGGTGCTGCATCAAGTGTTTTCTCCTCATGGTTTTGTGGAGAAGATTGTCACGTTTCAGAAGTCAGCTGGTTTTCAAGCCCTTATCCAGTATCAATCACGCCAGAGTGCAGTTGCAGCAAGGAATTCTCTTCAGGGACGCAATATCTATGATGGTTGCTGTCAGCTTGACATTCAATTTTCAAACCTTGATGAGTTACAAGTGAACTACAATAATGAGCGCTCTAGGGACTTCACAAATCCATCTCTGCCTTCAGAGCAGAAAGGCAGATCTTCACAGTCTGGTTATGGTGATGCAGGAGGTATGTATGCCCTTCAACCAGGAGCCAGGACAGTTGGATTTCCACAGATGCCCAATGCGTCTGCCATTGCTGCTGCCTTTGGAGGAGGTTTGCCCCCTGGAATTAGTGGGACAAATGACAGGTGTACTGTCCTTGTCTCTAATCTAAATCCTGACAGAATAGATGAAGATAAGCTTTTCAACCTGTTCTCCATCTATGGAAACATTGTCAGAATTAAGCTGCTCCGCAATAAGCCAGATCATGCACTAGTCCAAATGGGTGATGGCTTCCAGGCCGAGTTGGCAGTACATTTTCTGAAGGGAGCCATGCTATTTGGAAAGAGATTGGAGGTGAACTTCTCGAAGTATTCAAACATAACTACAGGTGCTGATACACACGAGTATATGAACTCAAGTCTTAACCGCTTCAACCGTAATGCTGCAAAGAATTACCGCTACTGCTGTTCCCCTACAAAGATGATCCATGTGTCCACTCTTAACCAGGACATCACGGAGGAGGAGATTGTGTCTCACCTGGAGGAACATGGCACCATTGTCAACACCAAGCTCTTTGAGATGAATGGGAAGAAGCAGGCTCTGGTGATGTTTGAAAATGAGGAGCAGGCAACTGAAGCTCTTGTATGCAAGCATGCCACCCCCCTTGGTGGATTAGCAATCCGCATTTCCTTTTCCCAGTTGCAGGGTATATAG 1332 0.4527 MTEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAANAMQFYTNVQPSIRGRNVYVQFSSHQELTTVDQNAQGRGDEPNRILLVTIHHLLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQSRQSAVAARNSLQGRNIYDGCCQLDIQFSNLDELQVNYNNERSRDFTNPSLPSEQKGRSSQSGYGDAGGMYALQPGARTVGFPQMPNASAIAAAFGGGLPPGISGTNDRCTVLVSNLNPDRIDEDKLFNLFSIYGNIVRIKLLRNKPDHALVQMGDGFQAELAVHFLKGAMLFGKRLEVNFSKYSNITTGADTHEYMNSSLNRFNRNAAKNYRYCCSPTKMIHVSTLNQDITEEEIVSHLEEHGTIVNTKLFEMNGKKQALVMFENEEQATEALVCKHATPLGGLAIRISFSQLQGI* 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1540 443 CDD RRM3_PTBPH3 255 330 IPR034797 -
Vvi18g1540 443 Gene3D - 253 349 IPR012677 -
Vvi18g1540 443 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 366 440 IPR000504 GO:0003723
Vvi18g1540 443 MobiDBLite consensus disorder prediction 188 208 - -
Vvi18g1540 443 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 59 IPR000504 GO:0003723
Vvi18g1540 443 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 370 433 IPR000504 GO:0003723
Vvi18g1540 443 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 256 330 IPR000504 GO:0003723
Vvi18g1540 443 Pfam RRM-like domain 96 175 IPR021790 -
Vvi18g1540 443 SUPERFAMILY RNA-binding domain, RBD 96 198 IPR035979 GO:0003676
Vvi18g1540 443 SMART rrm1_1 102 171 IPR000504 GO:0003723
Vvi18g1540 443 SMART rrm1_1 7 76 IPR000504 GO:0003723
Vvi18g1540 443 SMART rrm1_1 257 326 IPR000504 GO:0003723
Vvi18g1540 443 SMART rrm1_1 367 436 IPR000504 GO:0003723
Vvi18g1540 443 CDD RRM1_PTBPH3 6 80 IPR034795 -
Vvi18g1540 443 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 232 342 - -
Vvi18g1540 443 CDD RRM2_PTBPH3 97 184 IPR034796 -
Vvi18g1540 443 MobiDBLite consensus disorder prediction 188 211 - -
Vvi18g1540 443 SUPERFAMILY RNA-binding domain, RBD 254 437 IPR035979 GO:0003676
Vvi18g1540 443 PANTHER MATRIN 3/NUCLEAR PROTEIN 220-RELATED 3 421 - -
Vvi18g1540 443 NCBIfam hnRNP-L/PTB/hephaestus splicing factor family 4 439 IPR006536 GO:0003723|GO:0005634|GO:0006397
Vvi18g1540 443 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 80 IPR000504 GO:0003723
Vvi18g1540 443 SUPERFAMILY RNA-binding domain, RBD 3 92 IPR035979 GO:0003676
Vvi18g1540 443 CDD RRM4_PTBPH3 359 437 - -
Vvi18g1540 443 Gene3D - 350 442 IPR012677 -
Vvi18g1540 443 Gene3D - 1 96 IPR012677 -
Vvi18g1540 443 Gene3D - 98 202 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1540 Vvi-Chr18 19481773 19490845 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1540 K14948 - vvi:100243429 886.33