Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1511 ATGACCCATTACCCTTACGGCAAACAATATCTATATGGGAGTAGGAAACTTCCTGGTAATAAAACACTCAACTTATATCTTTGTTGCTTTTCATTTCAGGTTGTTGAGAGCATTATAAATTGTCTCAATATTTCTTCTGATCCCGCAACTTTTATTCAGGGTGCATTTCCAGAGATCCTGGAGAAAACAAAAGAGGATTTCTTCTCAAACACTATCATCATACTTAGAGAATGTGCAGACATAATTCATGAGAGAATCAAGGATATCCCCTGCATTACTTGCCCGCAAAAGCCAGAAGGATCCATGTTTGTAATGGTCAAGCTGAACCTGTCTCTATTGGAAGACATTGATGATGATGTAGAGTTCTATATGAAGCTGTCTAAAGAGGAATCAGTGATTGTCCTTACAGGTGTAGCTGTGGGAATGAAGAACTGGCCTCGAGTAACTTTTGCCATTGATCCACCTTCTCTCGAAGATGGACTTGGAAGGATCAAAGCCTTCTACCAGAGGCATATGCTAAGAAGGAATAAAGACTTCATCTCAAATCAATTCAATGCTTGTTGA 564 0.3918 MTHYPYGKQYLYGSRKLPGNKTLNLYLCCFSFQVVESIINCLNISSDPATFIQGAFPEILEKTKEDFFSNTIIILRECADIIHERIKDIPCITCPQKPEGSMFVMVKLNLSLLEDIDDDVEFYMKLSKEESVIVLTGVAVGMKNWPRVTFAIDPPSLEDGLGRIKAFYQRHMLRRNKDFISNQFNAC* 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1511 187 SUPERFAMILY PLP-dependent transferases 43 171 IPR015424 -
Vvi18g1511 187 Gene3D Aspartate Aminotransferase, domain 1 43 173 IPR015422 GO:0003824
Vvi18g1511 187 Pfam Aminotransferase class I and II 36 163 IPR004839 GO:0009058|GO:0030170
Vvi18g1511 187 PANTHER TYROSINE AMINOTRANSFERASE 32 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1511 Vvi-Chr18 19067450 19068738 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1511 K00815 - vvi:104882696 312.768