Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1510 ATGAAGAACAGTTCGAAGCGTCAGCCTGAGGCCTTTTGGCCGAGGATTGTGATGCGCAAATGGCTCAACATCAGTGCCAGGGAGTCAGATTACAGTGCAGATACCGAGGAAGAGGACAGCGACTCCGGGGATTCCGATACTGAAGATTTTGGTCAATGGGGGAGAGAATCTCGGTTTCGAAATGACCGAGGGGATGGCGTTTCAATTGATCCTAATGATGCTCTACCAAGAAGTAGAAGACGGAAGTCGGAGACTTTCAGGGCTCAGTACATAAACACAAAAGAACTCAGAATATGTGTTGGAACATGGAATGTTGGAGGAAAACTTCCATCTGAAGACTTAGATATTGATGAGTGGTTGGACATCGACAATCCTGCTGACATCTATGTGCTGGGTTTTCAGGAGATTGTACCTTTAAATGCTGGGAACATTTTTGGTGCTGAAGATAGCCGCCCAGTTCCAAGATGGGAAAACATTATTCGTGAAACATTGAATAGAGTTCGACCTATGAAGACAAAGTATAAATGCTATAGTGATCCTCCTTCTCCATCAAGGTTCAAGCCATCTGATGATGTCCCAGACATAGAAGAAGATATACTGCTTGAAACTGATAGTGATGGTGATGAGGTAGTTCATCCATTGGATGAAGAAACTGTTGGTTTTGATGAGACCGGGGATAGACCAGTCACAGGAGACAAAATGTTCATGGATTCGGAAGTATCAGACTCTACTGAGGGTCCCAAATCAGACTCTACTGAGGGTCCCAAATCAGACACATCTATGGAACAAGATCTACAGAGGCAATTTTCTTCTCCAAAGAGGCTGGATAGGTTGAATTGCCTTCGGACAGAAGATTATATGGGAAATGCAGGTGCCCAATCCAATGGGACATTAAACAAGGTACTCAGTGGGCCATCTGTTGCCCAATCCAATAGGATATTAACCAGAACATTCAGTGGATCAGAAAGGATTGGTTTGAGCTGGCCAGAACCTCCATTAGACTTGCTAGCTCAGCGTGTTTTAGAGAGACCGAATTCCTTTAAGGCGATTAAATCTTTCAAAGCGTACAGGTCATTCAGAACATGTAATTCTTTCAAGTCATTTACAAATGATGATCAACGAGTGCCACCAGAAATAGCCTTTCTTGCACAACTTGACCTTGAATCACTTATGCACCGGAAAAGAAGATCGTGTTTTGTAAGGATAGTAAGCAAGCAAATGGTTGGGATCTTCCTTACTATATGGGTTCGAAGAAGCTTGCGTAAGCATATTCAGAACCTAAAGGTATCTACTGTTGGAGTCGGTGTTATGGGCTACATTGGTAACAAGGGATCAGTATCTGTCAGCATGTCGATATATCAGACATTTTTTTGTTTTATATGTACTCACCTAACAGCGGGTGAAAAAGATGGAGATGAACTCAAAAGAAATGCTGATGTGCAAGAAATACATCGAAGGACTCGTTTTCATCCCGTTTCTAGTATTGGGCTTCCCAAAAGCATCCTTGACCACGAAAGAATTATCTGGCTGGGTGATCTGAATTATCGCATCACCTTGTCCTATGAGAAGACACGAGATCTAATCTCAAAAAAGGAGTGGTCCAAGTTGGTTGCGACAGACCAGCTTGTAAGAGAACTGAGAAAAGGTCGTGCATTTGATGGATGGTCTGAAGGGGTCTTAAATTTCCCACCAACTTATAAATATGAGTCAAATTCAGAGAAGTACTTTGGGGAGGATCCAAAGGCTGGGAGGCGTACTCCATCATGGTGTGACCGCATTCTTTCATATGGTAAGGGTATAAGGCTGCTGACTTATAAGAGAAGTGAGCTGAGGTTTTCAGATCATCGACCTGTAAGTGCTGCTTATATGGCAGAAGTTGAGGTCTTTTCTGCTCGGAAGCTACAACGGGCCCTCACAATCATGGATGCAGAAATTGAAGATGAGGAAATTCTAGCAGATACAGGAGTAGATGTTGGAATGAACTTCTTAAGAGTGGGAAAGGAAGCCAAAGTCATGGAGGGTAAAGGATGA 2031 0.4313 MKNSSKRQPEAFWPRIVMRKWLNISARESDYSADTEEEDSDSGDSDTEDFGQWGRESRFRNDRGDGVSIDPNDALPRSRRRKSETFRAQYINTKELRICVGTWNVGGKLPSEDLDIDEWLDIDNPADIYVLGFQEIVPLNAGNIFGAEDSRPVPRWENIIRETLNRVRPMKTKYKCYSDPPSPSRFKPSDDVPDIEEDILLETDSDGDEVVHPLDEETVGFDETGDRPVTGDKMFMDSEVSDSTEGPKSDSTEGPKSDTSMEQDLQRQFSSPKRLDRLNCLRTEDYMGNAGAQSNGTLNKVLSGPSVAQSNRILTRTFSGSERIGLSWPEPPLDLLAQRVLERPNSFKAIKSFKAYRSFRTCNSFKSFTNDDQRVPPEIAFLAQLDLESLMHRKRRSCFVRIVSKQMVGIFLTIWVRRSLRKHIQNLKVSTVGVGVMGYIGNKGSVSVSMSIYQTFFCFICTHLTAGEKDGDELKRNADVQEIHRRTRFHPVSSIGLPKSILDHERIIWLGDLNYRITLSYEKTRDLISKKEWSKLVATDQLVRELRKGRAFDGWSEGVLNFPPTYKYESNSEKYFGEDPKAGRRTPSWCDRILSYGKGIRLLTYKRSELRFSDHRPVSAAYMAEVEVFSARKLQRALTIMDAEIEDEEILADTGVDVGMNFLRVGKEAKVMEGKG* 677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1510 676 Gene3D Endonuclease/exonuclease/phosphatase 74 180 IPR036691 -
Vvi18g1510 676 PANTHER TYPE IV INOSITOL POLYPHOSPHATE 5-PHOSPHATASE 9 17 645 IPR045849 GO:0004445
Vvi18g1510 676 MobiDBLite consensus disorder prediction 205 233 - -
Vvi18g1510 676 MobiDBLite consensus disorder prediction 173 192 - -
Vvi18g1510 676 SMART i5p_5 309 630 IPR000300 GO:0016791|GO:0046856
Vvi18g1510 676 SUPERFAMILY DNase I-like 399 638 IPR036691 -
Vvi18g1510 676 MobiDBLite consensus disorder prediction 28 81 - -
Vvi18g1510 676 SUPERFAMILY DNase I-like 85 179 IPR036691 -
Vvi18g1510 676 FunFam Type I inositol polyphosphate 5-phosphatase 1 77 180 - -
Vvi18g1510 676 Gene3D Endonuclease/exonuclease/phosphatase 352 653 IPR036691 -
Vvi18g1510 676 MobiDBLite consensus disorder prediction 202 274 - -
Vvi18g1510 676 MobiDBLite consensus disorder prediction 243 257 - -
Vvi18g1510 676 MobiDBLite consensus disorder prediction 32 46 - -
Vvi18g1510 676 MobiDBLite consensus disorder prediction 48 67 - -
Vvi18g1510 676 FunFam type IV inositol polyphosphate 5-phosphatase 3 348 653 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1510 Vvi-Chr18 19035020 19046829 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1510 397 594 Acyl Lipid Metabolism Gene Families AT1G65580 32.889 4.77e-34 137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1510 - - vvi:100250966 1305.81