Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1506 ATGGGTAAGATCCAAAGCTGCATGTATGTTGTGTGTTTGCTGTGTTCTGCGACTCTTAACATACTTTTTGTGGGGAGATATGTGTATGTGAGTGGGAAGTGGGAGGTGGGTTGGAGCAGAAGGGCAGCAGAGGAAGCAGAAGCAGTGGCAGCAGTGTCATGCTCAGGCCATGGAAGAGCATACTTGGATGGTTTGGTTGTTGATGGAAGCCCTGTTTGTGAGTGCAATACCTGCTTTGGAGGCCCTGATTGCTCTCAATTTTCAGCTTCTTGTGTTGCAGATGTTGACAGCGGCGATCCACTGTTCTTGGAGCCCTTCTGGATGCAGCATGCAGCAAGCAGTGCGCTATTAGTAGCAGGTTGGCATCGAATGAGCTATTCATTCCATGATCATTCCTTAATCTCAAAAGAACTAGAGGAGCTCATCCGCAAGCTACATGCCATTGTTGGAAATGCTAACACAACAGGCAGATTCATTGTTTTCGGGGCCGGCTCTATCCAGCTCCTCAATGCTGCAGTTCATGCCCTCTCACCCCATAATTCATCTGCTCCAGCTAAAGTTGTTGCCACAATCCCCTTTTACCCGGTTTATAAATCACAAACAGACTTCTTTCGATCAGTGGACTTCCAGTTTGTAGGTGACACATCCTTGTGGAAGAACACTTCAGATACCACTTCCAATCTCATCGAGTTTGTGACTGCACCCAATAATCCTGATGGAAAGTTGAATAAGGCAGTTCTTCAAGGCCCTAATGCCAAACCCATTTACGATCATGCCTATTACTGGCCGCATTTCACACCAATTCCTGCTCCTGCAGATGAAGACCTCATGATATTTACCTTTTCTAAGCTTACTGGTCATGCTGGGAGTAGATTCGGGTGGGCATTGATAAAGGATAAGGATGTGTACGAGACAATGTCAAATTATATGAGTTTGAACGTCGATGGTGTTTCCCGGGACACTCAGTTAAGAGCTTTCAAGCTTTTAAAAGTAGTGACTCGAGGGAGAGGAAGAGAAATATTCGAATTCGGTTACAAAACAATGAAAGACCGGTGGGAAAAATTGAACAGGGCCTTGCTGATGTCCAGACGTTTCTCTGTCCAGGAAAGTTCACCGCAATACTGCACTTTTTCTGGCAAAGTCAAGAGACCTTCTCCAGCTTATGCATGGCTGAAGTGCGAGAAAGAAGAAGATAAAGAGTGTTACAGAGTCCTGAAAAAGGCTGGCATCATTGGGCGTAATGGTACTTTGTTTAGTGCTAATAGTAGCTATGTTCGGCTCAGCCTCATCAAGACCCAAGATGACTTTGATATATTGCTGCACCAAATCAATAAGTTAGTTGGTGAGGAAAATGGCGGTAAAAGTAGTATGCGAAGAATGAAATCAACCGTCAGTTGA 1398 0.4499 MGKIQSCMYVVCLLCSATLNILFVGRYVYVSGKWEVGWSRRAAEEAEAVAAVSCSGHGRAYLDGLVVDGSPVCECNTCFGGPDCSQFSASCVADVDSGDPLFLEPFWMQHAASSALLVAGWHRMSYSFHDHSLISKELEELIRKLHAIVGNANTTGRFIVFGAGSIQLLNAAVHALSPHNSSAPAKVVATIPFYPVYKSQTDFFRSVDFQFVGDTSLWKNTSDTTSNLIEFVTAPNNPDGKLNKAVLQGPNAKPIYDHAYYWPHFTPIPAPADEDLMIFTFSKLTGHAGSRFGWALIKDKDVYETMSNYMSLNVDGVSRDTQLRAFKLLKVVTRGRGREIFEFGYKTMKDRWEKLNRALLMSRRFSVQESSPQYCTFSGKVKRPSPAYAWLKCEKEEDKECYRVLKKAGIIGRNGTLFSANSSYVRLSLIKTQDDFDILLHQINKLVGEENGGKSSMRRMKSTVS* 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1506 465 PANTHER BIFUNCTIONAL ASPARTATE AMINOTRANSFERASE AND GLUTAMATE/ASPARTATE-PREPHENATE AMINOTRANSFERASE-RELATED 115 447 - -
Vvi18g1506 465 CDD AAT_like 94 445 - -
Vvi18g1506 465 Gene3D - 35 134 IPR037029 GO:0016846
Vvi18g1506 465 Gene3D Aspartate Aminotransferase, domain 1 338 448 IPR015422 GO:0003824
Vvi18g1506 465 SUPERFAMILY PLP-dependent transferases 38 447 IPR015424 -
Vvi18g1506 465 Gene3D - 135 337 IPR015421 GO:0003824
Vvi18g1506 465 Pfam Alliinase EGF-like domain 38 91 IPR006947 GO:0016846
Vvi18g1506 465 Pfam Allinase 93 447 IPR006948 GO:0016846
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1506 Vvi-Chr18 18980852 18985143 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1506 - - vvi:100266412 940.258