Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1503 ATGGGTAAGATTCAAAGCTGCATGTATGTTGTGTGTTTGCTGTGTTCTGTGACTCTTAACATACTTTTTGTGGGGAGAGATGTGTATGTGGGTGGGAAGTGGGAGGTGGGTTGGAGCAGAAGGGCAGCAGAAGAAGCAGAAGCAGTGGCAGCAGTGTCATGCTCGGGCCATGGAAGAGCATTCCTGGATGGTTTGGTTGTTGATGGAAGTCCTGTTTGTGAGTGCAATACCTGCTTTGGAGGCCCTGATTGCTCTCAATTTTCAGCTTCTTGTGTTGCAGATGTTGACAGCGGGGATCCGCTGTTCTTGGAGCCCTTCTGGATGCAGCATGCAGCTAGCAGTGCAGTATTAGTAGCGGGTTGGCATCGAATGAGCTATTCATTCAATGATCATTCCTCAATCTCACAAGAACTAGTGAAGCTCATCCGCAAGCTACATGCCATTGTTGGAAATGCTAACACAACAGGCAGATTCATTGTTTTCGGGGCCGGCTCTACCCAGCTTCTCAATGCTGCAGTTCATGCCCTCTCACCCCATAATTCATCTGCTCCAGCTAAAGTTGTTGCCACAATCCCCTTTTACCCGGTTTATAAATCACAAACAGACTTCTTTCGATCAGTGGACTTCCAGTTTGCAGGTGACACATCCTTGTGGAAGAACAGTACTTCAGATCCCACTTCCAATTTCATCGAGTTTGTGACTGCACCCAATAATCCTGATGGAAAGTTGAATAAGGCAGTTCTTCAAGGCCCTAATGTCAAACCCATTTACGATCATGCCTATTATTGGCCGCATTTCACACCAATTCCTGCTCCTGCAGATGAAGACCTCATGATATTTACCATTTCTAAGCTTACTGGTCATGCTGGGAGTAGATTCGGGTGGGCATTGATAAAGGATAAGGATGTGTACGAGACAATGTTAGATTATATGAGTTTGAACACCTTAGGTGTTTCCCGGGACACTCAGTTAAGAGCTTTTAAGCTTTTAAAAGTAGTGACTCAAGGGAGAGGAAGAGAAATATTCAAATTCGGTTACAAAACAATGAAAGACCGGTGGGAAAAATTGAACAAGGCCTTACTGATGTCCAGACGTTTCTCTGTCCAGGAAAATTCACCTCAATACTGTACTTTTTTCGGCAAAGTTAAGAGACCTTCTCCAGCTTATGCATGGCTGAAGTGTGAGAAAGAAGAAGATAAAGAGTGTTACGGAGTCCTGAAAAAGGCTGGCATCATTGGGCGTAATGGTACTTTGTTTGGTGCTAACAGTAGCTATGTTCGGCTCAGCCTCATCAAGACCCAAGATGACTTCGATATATTGCTGCACCAGATCAATAAGTTAGTTAGTGAGGAAGATGGCGGTAAAAGTAGTATGTGA 1377 0.4459 MGKIQSCMYVVCLLCSVTLNILFVGRDVYVGGKWEVGWSRRAAEEAEAVAAVSCSGHGRAFLDGLVVDGSPVCECNTCFGGPDCSQFSASCVADVDSGDPLFLEPFWMQHAASSAVLVAGWHRMSYSFNDHSSISQELVKLIRKLHAIVGNANTTGRFIVFGAGSTQLLNAAVHALSPHNSSAPAKVVATIPFYPVYKSQTDFFRSVDFQFAGDTSLWKNSTSDPTSNFIEFVTAPNNPDGKLNKAVLQGPNVKPIYDHAYYWPHFTPIPAPADEDLMIFTISKLTGHAGSRFGWALIKDKDVYETMLDYMSLNTLGVSRDTQLRAFKLLKVVTQGRGREIFKFGYKTMKDRWEKLNKALLMSRRFSVQENSPQYCTFFGKVKRPSPAYAWLKCEKEEDKECYGVLKKAGIIGRNGTLFGANSSYVRLSLIKTQDDFDILLHQINKLVSEEDGGKSSM* 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1503 458 Pfam Alliinase EGF-like domain 38 91 IPR006947 GO:0016846
Vvi18g1503 458 Gene3D - 135 338 IPR015421 GO:0003824
Vvi18g1503 458 CDD AAT_like 94 446 - -
Vvi18g1503 458 Gene3D Aspartate Aminotransferase, domain 1 339 449 IPR015422 GO:0003824
Vvi18g1503 458 Pfam Allinase 93 448 IPR006948 GO:0016846
Vvi18g1503 458 PANTHER BIFUNCTIONAL ASPARTATE AMINOTRANSFERASE AND GLUTAMATE/ASPARTATE-PREPHENATE AMINOTRANSFERASE-RELATED 112 449 - -
Vvi18g1503 458 Gene3D - 35 134 IPR037029 GO:0016846
Vvi18g1503 458 SUPERFAMILY PLP-dependent transferases 38 448 IPR015424 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1503 Vvi-Chr18 18930346 18934536 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1503 - - vvi:100249244 929.087