Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1502 ATGGGTCAGCTCCAACGATGGATATATCCTGCCGGTTTGCTGTGTTCTGTGATTCTTAACGTAGTTTTTGTGGTGCTGTACGTGCAAATGAATTCGAAGTGGAAGCCGGATTGGAGCAAAAGTGCAGCAAAAGAAGCAGAAGCAGTGGCGGCAGTGACATGCTCAGGCCATGGAAGAGCATACTCGGATGGTTTGGTTGTTGATGGAAGCCCTGTTTGTGAGTGCAATACCTGCTTTGAAGGCCCTGATTGCTCTCAGTTTTCACCTCATTGTGCTGCAGATGTTGAAAGTGGGGATCCGCTGTTCTTGGAGCCCTTTTGGATGCAGCATGCAGCCAGCAGCGCAGTGGTAATAATGGGTTGGCATCGAATGAGCTATTCATACAGTGATCGTTCTACAATCTCACAAGAACTCGACAAGCTCATCCGCAAGCTACATGCTCTTGTTGGAAACGCAAACACAACAGGCAGATTCATCGTTTTTGGGGCCGGCTCTACCCAGCTCCTCAATGCTGCAGTTCATGCCCTTTCTCCCCACAACTCATCCGAACCAGCCAAAGTTGTTGCTACAATCCCTTACTACCCGGCTTACAAGTCACAAACGGAATTCTTCGATTCTGTGCATTTTCATTTTGAAGGAGATGCATCCATGTACATGAACAGTAGTACTTCAAATACCACTTCCACTTTCATTGAGTTCGTGACTTCGCCCAACAATCCAGATGGGAAGTTGAGTAAGGCAGTTCTTCGGGGCCCTAATGTCAAGGCAATATATGATCGTGCCTACTACTGGCCTCATTTCACTCCAATTCCAGCTCCTGCAGATGACGATCTCATGTTGTTTACCATTTCCAAGCTTACTGGTCATGCTGGGAGTAGATTCGGGTGGGCACTGGTAAAGGAAAAGGATGTGTTCGAAGCAATGACAACTTATATGAGCAGGAACACGGAGGGTGTTTCACGGGACAGTCAACTAAGAGCTTTGAAGCTTCTAAAAGTAGTGATGGAAGGAAGTGGAAGGGAAATATTCGAATTCAGTTCCAAAACGATGAAAGACCGCTGGGATCAATTGAACAAGACCTTACCTGTCTCTAAGCATTTCTCTCTCCAGGAAATTACACCACAACACTGCACTTTTTTTCAGCGAGTCAGGACACCTTCTCCAGCTTATGCGTGGTTGAAGTGTGAGAGAAAAGAAGATAAAGACTGTCCTGCAGTCATCAGAGAAGCTGGCATCATTGGGCGTAATGGTACTCTCTATGGTTCTAATAGTAGCTATGTTCGGCTCAGCCTCATCAAGACCCAAGATGACTTTGATGTAATGCTCCACCATTTGAACAAGCTAGTCACCAAGGAAAAGCAGAACGTGAAGAATGGAATCAACCATATCAGTTCATCGTATATAAACTTATGA 1413 0.4579 MGQLQRWIYPAGLLCSVILNVVFVVLYVQMNSKWKPDWSKSAAKEAEAVAAVTCSGHGRAYSDGLVVDGSPVCECNTCFEGPDCSQFSPHCAADVESGDPLFLEPFWMQHAASSAVVIMGWHRMSYSYSDRSTISQELDKLIRKLHALVGNANTTGRFIVFGAGSTQLLNAAVHALSPHNSSEPAKVVATIPYYPAYKSQTEFFDSVHFHFEGDASMYMNSSTSNTTSTFIEFVTSPNNPDGKLSKAVLRGPNVKAIYDRAYYWPHFTPIPAPADDDLMLFTISKLTGHAGSRFGWALVKEKDVFEAMTTYMSRNTEGVSRDSQLRALKLLKVVMEGSGREIFEFSSKTMKDRWDQLNKTLPVSKHFSLQEITPQHCTFFQRVRTPSPAYAWLKCERKEDKDCPAVIREAGIIGRNGTLYGSNSSYVRLSLIKTQDDFDVMLHHLNKLVTKEKQNVKNGINHISSSYINL* 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1502 470 CDD AAT_like 97 447 - -
Vvi18g1502 470 Gene3D - 35 134 IPR037029 GO:0016846
Vvi18g1502 470 Gene3D - 135 339 IPR015421 GO:0003824
Vvi18g1502 470 Pfam Allinase 93 449 IPR006948 GO:0016846
Vvi18g1502 470 SUPERFAMILY PLP-dependent transferases 38 449 IPR015424 -
Vvi18g1502 470 PANTHER BIFUNCTIONAL ASPARTATE AMINOTRANSFERASE AND GLUTAMATE/ASPARTATE-PREPHENATE AMINOTRANSFERASE-RELATED 111 449 - -
Vvi18g1502 470 Gene3D Aspartate Aminotransferase, domain 1 340 450 IPR015422 GO:0003824
Vvi18g1502 470 Pfam Alliinase EGF-like domain 37 91 IPR006947 GO:0016846
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1502 Vvi-Chr18 18915284 18918742 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1502 - - vvi:100254342 927.546