Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1500 ATGAGCTATGTATTCGAGAACCACTCTTTAATTTCACGAGTCCTCGAAAACCAGATCCGAAAACTGCATTCTGCTGTTGGAAATGCAGTCACACAGGGAAGGTTAATCGTCTTTGGCGCTGGCTCAACCCAACTCCTCAATGCTGCAGTTGCATGCCCTTTCAACAGACAATTCATCAGCCCCAGCTATAAAGTTGTGGCATCCTTCCCTTTTTACCCGGTTTACCAACTACAAACAGACTTCTTTAGATCAAAGGACTTTCAGTTTCAAGGGGACGCATCCGTGTGGAAGAACAACTCAGATAGTACCTCAAATCTCATCGAATTTATGACTGCCCCCAATAATCCTGATGGGCAGCTGAATAAAGCAGTTCTTCACGGCCCATATGTGAAGGCCATTCATGATCATGCCTATTATTGGCCTCAATTTACAGCAATTCCAGCTCCCGCAGAATGA 456 0.4496 MSYVFENHSLISRVLENQIRKLHSAVGNAVTQGRLIVFGAGSTQLLNAAVACPFNRQFISPSYKVVASFPFYPVYQLQTDFFRSKDFQFQGDASVWKNNSDSTSNLIEFMTAPNNPDGQLNKAVLHGPYVKAIHDHAYYWPQFTAIPAPAE* 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1500 151 Gene3D - 11 151 IPR015421 GO:0003824
Vvi18g1500 151 SUPERFAMILY PLP-dependent transferases 10 148 IPR015424 -
Vvi18g1500 151 PANTHER BIFUNCTIONAL ASPARTATE AMINOTRANSFERASE AND GLUTAMATE/ASPARTATE-PREPHENATE AMINOTRANSFERASE-RELATED 14 149 - -
Vvi18g1500 151 Pfam Allinase 1 150 IPR006948 GO:0016846
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1500 Vvi-Chr18 18882118 18882775 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1500 - - vvi:100247483 252.292