Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1499 ATGGCTAAGATCCAAATCTCCTTGTGTGTTGTGTGTTTAGTGTGTTCTTTAATCCTCAATTTGTTGCTTGTGAGTAACCATATGCATGTGGGTGGGAAGTGGGAGCTGAGTTGGAGCAGAAAAGCAGCAGAAGAAGGAGAAGCAGCAGCAGCAGTGGCATGCTCCGGCCATGGAAGAGCATACTTGGATGGCTTGGTTGTCGATGGAAGCCCTGTTTGTGAGTGCAACTCCTGCTTTGAAGGTCCTGATTGCTCTCAATTCTCACCTGATTGTATTGCAAATGTTGACGGAGGGGATCCCCTATTCTTAGAGCCCTTCTGGATGCAGAATGCAGCTCGCAGTGCAATGCTGGTAGCAGGGTGGCATCGAATGAGCTATGCATTCAACAACCAGTCTTTAATGTCACAAGTCCTCGAAAACCAGATCCGAAAACTACACACTGCTGTTGGAAATGCAGTCACACAAGGAAGGTTCATCGTCTTTGGTACTGGCTCAACCCAACTCCTCAATGCTGCAGTGTATGCCCTTTCACCAGACAATTCATCAGCCCCAGCTAAAGTTGTTGCATCCTTCCCTTTTTACCCGGTTTACCAACTACAAACAGACTTCTTTAGATCAAAGGATTTTCAGTTTCAAGGGGACGCATACTTGTGGGAGAACAACTCAGATAGTACCTCAAATCTCATCGAATTTGTGACTGCCCCCAATAATCCTGATGGACAGCTGAATAAAGCAGTTCTTCACGGCCCATATGTGAAGGCCATTCATGATCATGCCTATTATTGGCCTCACTTTACAGGAATTCCAGCTCCCGCAGATGAAGACGTCATGGTATTTACTCTTTCTAAGCTTACTGGTCATGCAGGCACTAGATTCGGATGGGCACTGATAAAGGATGAAGCTGTGTACCAAAGAATGTCAACTTATGTAAAACTGAATTGCTTAGGTATTTCCCGGGATGCTCAGTTAAGAGCCTATAAACTTCTGAAAGTAGTCATGGAAGGGAGTGGAAGGGAAATATTTGAGTTTGGTCACGCAACAATGAAGAACCGCTGGGAAAAACTGAGCAGTGCCTTATCAGTGTCCAAACGCTTCTCTCTCCAGGACATTGCGCCACAATACTGTACCTTCTTCCAAACAGTCAGAGCTGCTTCTCCAGCTTATGCATGGTTGAGGTGTGAGCGAGAGGAGGATAAAGACTGTTACAGAGCCCTCAAAAAGGCTGGCATCATTGGACGTGAGGGTACTTTGTTTGGTACTGCGAGTAGCTATGTTCGGCTCAGCCTCATCAAGACCCAAGATGACTTTGATATGCTGCTGCACCAAATAAAAAAGCTAGTGGCTGAGGAAGATGACATGCATGCCAGAAGTACTATGTGA 1380 0.4594 MAKIQISLCVVCLVCSLILNLLLVSNHMHVGGKWELSWSRKAAEEGEAAAAVACSGHGRAYLDGLVVDGSPVCECNSCFEGPDCSQFSPDCIANVDGGDPLFLEPFWMQNAARSAMLVAGWHRMSYAFNNQSLMSQVLENQIRKLHTAVGNAVTQGRFIVFGTGSTQLLNAAVYALSPDNSSAPAKVVASFPFYPVYQLQTDFFRSKDFQFQGDAYLWENNSDSTSNLIEFVTAPNNPDGQLNKAVLHGPYVKAIHDHAYYWPHFTGIPAPADEDVMVFTLSKLTGHAGTRFGWALIKDEAVYQRMSTYVKLNCLGISRDAQLRAYKLLKVVMEGSGREIFEFGHATMKNRWEKLSSALSVSKRFSLQDIAPQYCTFFQTVRAASPAYAWLRCEREEDKDCYRALKKAGIIGREGTLFGTASSYVRLSLIKTQDDFDMLLHQIKKLVAEEDDMHARSTM* 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1499 459 Gene3D Aspartate Aminotransferase, domain 1 338 448 IPR015422 GO:0003824
Vvi18g1499 459 CDD AAT_like 94 445 - -
Vvi18g1499 459 Gene3D - 135 337 IPR015421 GO:0003824
Vvi18g1499 459 Pfam Alliinase EGF-like domain 37 91 IPR006947 GO:0016846
Vvi18g1499 459 Pfam Allinase 93 447 IPR006948 GO:0016846
Vvi18g1499 459 SUPERFAMILY PLP-dependent transferases 38 447 IPR015424 -
Vvi18g1499 459 Gene3D - 35 134 IPR037029 GO:0016846
Vvi18g1499 459 PANTHER BIFUNCTIONAL ASPARTATE AMINOTRANSFERASE AND GLUTAMATE/ASPARTATE-PREPHENATE AMINOTRANSFERASE-RELATED 86 449 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1499 Vvi-Chr18 18859063 18864043 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1499 - - vvi:100247483 896.73