Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1494 ATGGTGACTGATTCTTCCCCTTCTGTAGTGCAGCACCCACTGTGCCATGGTAGTGATAGCTCCGCATTGCTTGAGTTCAAGCAAAGCTTTTTGATTGAAAAGTTTGCTTCTGGTGATCCTTCTGCTTATCCAAAGGTTGAAATGTGGCAGCCGGAAAGAGAAGGAAGTGACTGCTGCTCATGGGATGGCGTCGAGTGTGACACCAACAATGGCCATGTGATCGGCCTTGACCTCTCTAGCAGTTGTCTCTATGGTTCTATCAACTCTAGCAGCAGCCTCTTCCGTCTTGTTCATCTTCTGAGGCTTGACCTCTCTGATAATGATTTCAATTACTCCAAGATCCCACATGGGGTTGGTCAGCTTTCAAGGCTGACAAGTCTCAACCTGTCCTCTTCCAGATTTTCTGGCCAAATCTCATCACAGATCCTGGAGCTGTCCAAATTGGTTTTCCTTGATCTCTCATCAAACCCTTTGCACCTCCACAAACCCAACTTGAGAAATCTGGTTGTGAACTTAACCCAGCTCAAGAAACTTCATCTCAACGAGGTGAACATTTCTTCTAGAGTACCTGATGTCTTCGCAAATTTATCTTCTCTGACATCTCTCTTGCTTGAAAATTGTGGATTGCATGGTGAATTCCCAACAGGTATTTTCCATCTATCAAGCCTACAATTTCTCAGTGTGAGAAATAATCCAGATTTGACTGGTCTTTTTCCTGAGTTCCATCACACCAGTTCTCTTAAGTTGTTGGCTCTTGCTGGTACATCTTTCTCTGGTCGGCTACCAACTTCAATCGGAAACCTTGACTCCTTGGTTGAGTTGAATATCAGTTCATGCAACTTCACATCTGGGTTGATTCCATCTTCCCTTGGTCGTCTTATCCAGCTAACCAGTCTAGACCTTTCAAGGAACTCTTTCAGTGGCCAGATCCCTTCTCTTTCAAATCTAAAAGAACTAGATACTTTAGACCTTTCCTACAACCAATTTATTGGTGAAATCCCATCTTGGCTAATGAATCTGACCAGATTAAGGCGTTTGTATCTTGCAGGAAACAGATTGGAGGGTCCAATCCCAAGTTCGTTATTTGGACTAGTGAATCTTCAATGTCTTTATCTAGAGTCAAATTACTTGAATGGGACAGTGGACCTCAATATCTTATCTGAGATGAAAAATCTCATTGAACTCCAGTTATCAAATAACAGTTTATCATTGCTTAGTAGCATCAACATCAACGCTACTACTCTTCCTACGTTCAAAGCTTTAGGATTGAATTCATGCAACGTAACTGTGTTCCCTGATTTCCTGCAGAACCAAGATGAGCTGGAGGTGCTCCTCCTCCGCCAAAACAAAATCCATGGTCCAATTCCAAAATGGTTGATTCCTCCCAATTCCACCACAGTCTCAGAGAATGAACTGAGCGGAGAAATCCCACCATCTTTTTGCAACATGAGTTCTCTTCGGTTACTTGATTTCTCTAGTAACAGTGTGAGTGGTAGGATTCCACTGTGTCTGGCCAACTTCAGCAGTTCTTTGAATGCACTGAATCTTGGAAGCAACAACTTGTATGGGGTCATTCCTCAAGCTTGCACCAGCAGAAACAATTTGATGAAGATCGACTTAGGTGGAAACCATCTAGAAGGGCAAGTACCAACATCACTGGGGAGCTGTCTGATGCTTGAGAAGCTTGATCTTGGAAATAATCAAATAAATGATACCTTCCCCTTTTGGTTGGGAGCTCTTCCGAAGTTGCAGGTTCTCATTTTGCGGTCCAACAAATTCCATGGTGAAATACGAGGACCCAGAACCAATTTTGGGTTTCCCAAGCTGCGTATCATTGACATCTCTCATAATGGTTTTACTGGTAATTTTCCATGGGAATACTTCCAAAGCTGGGATGCCATGAAAATTTTGGAATCAAAACACTTAACATACATGCAGGTGGGCATAAAGTTTCAGGTCTCAAGGCATTTGTGGACAGCCTACTACACATGCTCAATGACAATGGTAAACAAAGGCATGGAAAGGGTGTATGAGAAGATCCCCGACATCTTCACAGCGGCTGATCTCTCAAGCAATAAATTTGTAGGAGAGATGGCTGACTGCATTGGGAAAGCCAAGGGGCTTCATTTGCTCAACCTTTCCAACAATGCTCTTACAGGTCAAATTCCAACATCCTTGGTGAACCTGATGGAGTTGGAGGTGTTGGACCTTTCTCAGAACAAACTCTCCGGCGAGATACCCCAACAACTAGTCCAGCTCACGTTCCTTGAGTTCTTCAATGTGTCCCACAACCATCTGAAGGGTCCTATACCACGAGCAAATCAATTTAGTACATTTCCAAATAGCTCATTTGATGGGAACTTAGGATTGTGTGGGAACCCTTTGTCAAGGGATTGTGGAAATCCAGAGGCATCAGCGCCACCTCCTTCAACCTCTGATCAAAGTTCCCCAGGTGAACTTGACTGGATAATTGTATTGTTGGGATATGGAAGCGGGCTGGTAATTGGAGTTCTTATGGGGTACAGATTGACCACAAGGAAACATGAATGGTTTGTGAGGACTTTCGGAAGACAAAAAAGATGGAGGAGGAAAAAATGA 2598 0.4346 MVTDSSPSVVQHPLCHGSDSSALLEFKQSFLIEKFASGDPSAYPKVEMWQPEREGSDCCSWDGVECDTNNGHVIGLDLSSSCLYGSINSSSSLFRLVHLLRLDLSDNDFNYSKIPHGVGQLSRLTSLNLSSSRFSGQISSQILELSKLVFLDLSSNPLHLHKPNLRNLVVNLTQLKKLHLNEVNISSRVPDVFANLSSLTSLLLENCGLHGEFPTGIFHLSSLQFLSVRNNPDLTGLFPEFHHTSSLKLLALAGTSFSGRLPTSIGNLDSLVELNISSCNFTSGLIPSSLGRLIQLTSLDLSRNSFSGQIPSLSNLKELDTLDLSYNQFIGEIPSWLMNLTRLRRLYLAGNRLEGPIPSSLFGLVNLQCLYLESNYLNGTVDLNILSEMKNLIELQLSNNSLSLLSSININATTLPTFKALGLNSCNVTVFPDFLQNQDELEVLLLRQNKIHGPIPKWLIPPNSTTVSENELSGEIPPSFCNMSSLRLLDFSSNSVSGRIPLCLANFSSSLNALNLGSNNLYGVIPQACTSRNNLMKIDLGGNHLEGQVPTSLGSCLMLEKLDLGNNQINDTFPFWLGALPKLQVLILRSNKFHGEIRGPRTNFGFPKLRIIDISHNGFTGNFPWEYFQSWDAMKILESKHLTYMQVGIKFQVSRHLWTAYYTCSMTMVNKGMERVYEKIPDIFTAADLSSNKFVGEMADCIGKAKGLHLLNLSNNALTGQIPTSLVNLMELEVLDLSQNKLSGEIPQQLVQLTFLEFFNVSHNHLKGPIPRANQFSTFPNSSFDGNLGLCGNPLSRDCGNPEASAPPPSTSDQSSPGELDWIIVLLGYGSGLVIGVLMGYRLTTRKHEWFVRTFGRQKRWRRKK* 866
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1494 865 PRINTS Leucine-rich repeat signature 729 742 - -
Vvi18g1494 865 PRINTS Leucine-rich repeat signature 296 309 - -
Vvi18g1494 865 FunFam Tyrosine-sulfated glycopeptide receptor 1 555 804 - -
Vvi18g1494 865 SMART LRR_typ_2 145 168 IPR003591 -
Vvi18g1494 865 SMART LRR_typ_2 96 121 IPR003591 -
Vvi18g1494 865 SMART LRR_typ_2 196 220 IPR003591 -
Vvi18g1494 865 SMART LRR_typ_2 340 364 IPR003591 -
Vvi18g1494 865 SMART LRR_typ_2 389 411 IPR003591 -
Vvi18g1494 865 SMART LRR_typ_2 729 753 IPR003591 -
Vvi18g1494 865 SMART LRR_typ_2 172 195 IPR003591 -
Vvi18g1494 865 SMART LRR_typ_2 293 317 IPR003591 -
Vvi18g1494 865 Gene3D Ribonuclease Inhibitor 317 463 IPR032675 -
Vvi18g1494 865 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1-LIKE-RELATED 14 800 IPR046956 -
Vvi18g1494 865 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 283 504 - -
Vvi18g1494 865 SUPERFAMILY RNI-like 101 460 - -
Vvi18g1494 865 Pfam Leucine rich repeat N-terminal domain 17 67 IPR013210 -
Vvi18g1494 865 ProSiteProfiles Leucine-rich repeat profile. 295 317 IPR001611 GO:0005515
Vvi18g1494 865 Pfam Leucine Rich Repeat 295 316 IPR001611 GO:0005515
Vvi18g1494 865 Pfam Leucine Rich Repeat 342 363 IPR001611 GO:0005515
Vvi18g1494 865 Gene3D Ribonuclease Inhibitor 13 232 IPR032675 -
Vvi18g1494 865 Gene3D Ribonuclease Inhibitor 464 806 IPR032675 -
Vvi18g1494 865 Gene3D Ribonuclease Inhibitor 233 316 IPR032675 -
Vvi18g1494 865 Pfam Leucine rich repeat 559 618 IPR001611 GO:0005515
Vvi18g1494 865 Pfam Leucine rich repeat 707 766 IPR001611 GO:0005515
Vvi18g1494 865 SUPERFAMILY L domain-like 432 784 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1494 Vvi-Chr18 18753632 18756366 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1494 8 860 Receptor kinase-like Gene Family AT1G47890 38.493 1.00e-179 543
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1494 - - vvi:100267998 1601.26