Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1492 ATGACGGCTGGCAGAACCACTTGTATCGTCTTTTCTGATGATGACTTGCCACCGGAGGGCTCGGACCACACTCGTCCGCTCTACATATCTGTTGGCTGTTCAGGCCGTCGAGTCCCATCTGTCATCTTGGACAATGGCTCGGCCCTGAACGTATGTCCTCTTGCCACTGCCATCGCCCTTGGATACGCTCCTTCTGATTTCGGTCCCTCTACTCAGACCGTTCGTGCTTATGACAGCACCCGTAGAGAGGTCATGGGTACTTTGGAGATCGAGTTGCTGATCGGTCCGGCCACTTTTGTCGCTGTATTCCAGGTTTTGAGGATTCCTACATCCTTTAACCTGCTTTTGGGCCGACCATGGATCCACAGAGCCGGGGTCATTCCTTCTTCCCTTCATCAGAAGGTGAAGTTTATTCACGATGGTCAGGTCGTCATGGTGCAGTCTGTGGGAGACATGTTCATTGCTGCCGAGCCTGTGCTCGAGATTAGTCACACTGATGACGATATTTTTCTGACTGGATTCACCTTCGATGAGGTGCAGACTGTGGAGATAGAGGATTTCTGCCGGGATTTTGTGGCCATGTCCTTTGACCAGCATGGGAGCACAGTGGTGCTCGATATTATGCGGGGCATGTCCTATCTACCCGGCATGGGGTTGGGTCGACGTCAGCATGGACCGAGCGAGTTCATAGCCATCCTTGATCACGACGTACCGTTCGGACTCGGGTTCATCCCCACCGAGGCTGACTATCAATGCATGGCGCATTTGCGCAAGGAGAGAGTGAGGGCTCGGCTGACCCACACGCCTTTCGACTATCCTCTTCGCCCATACACCAGGAGCTTATCTGATTACTTTGTGAGGGCATCGGAGTCACATGCACCATCTGATGGGATCATCGGAGGACTCAGCACCACCCAAGAGGCCGAGCTTCAGCGCCTCCTCCAGCAGTTACAGTTGAGTGACGAAGCCCCTGGCCCTTCGGCTTCTGTGTTGATTGCTCCCCCCTCCCCATATCGCACGAGCCTTATGACGCTTTGCTTCCCGGATGAGATCGATGATCACAGGACTTTTGCCGAGATTGGACACGTAGTGGATGGAGCCGTGCCGCGTGACGAGTACGTTGATGAGATGCTCGTGATGAGCTTGAGCCAGACCCGAGGAGATAGCCCCGCCGGAGCTCGCTTCACCATTTGA 1194 0.5452 MTAGRTTCIVFSDDDLPPEGSDHTRPLYISVGCSGRRVPSVILDNGSALNVCPLATAIALGYAPSDFGPSTQTVRAYDSTRREVMGTLEIELLIGPATFVAVFQVLRIPTSFNLLLGRPWIHRAGVIPSSLHQKVKFIHDGQVVMVQSVGDMFIAAEPVLEISHTDDDIFLTGFTFDEVQTVEIEDFCRDFVAMSFDQHGSTVVLDIMRGMSYLPGMGLGRRQHGPSEFIAILDHDVPFGLGFIPTEADYQCMAHLRKERVRARLTHTPFDYPLRPYTRSLSDYFVRASESHAPSDGIIGGLSTTQEAELQRLLQQLQLSDEAPGPSASVLIAPPSPYRTSLMTLCFPDEIDDHRTFAEIGHVVDGAVPRDEYVDEMLVMSLSQTRGDSPAGARFTI* 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1492 397 PANTHER DNA-DIRECTED RNA POLYMERASE SUBUNIT ALPHA 9 269 - -
Vvi18g1492 397 CDD retropepsin_like 29 122 - -
Vvi18g1492 397 Gene3D Acid Proteases 15 146 IPR021109 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1492 Vvi-Chr18 18734272 18735465 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1492 - - vvi:109122754 692.189