Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1488 ATGGAGTTAAAGAAGAAGAGCTTGGTGTTTCTGCTATTGAATGTGCTCATACGCTGCATTGCCAGCCAGAATGTCACTACCTTCTACTGGGTTCTCAATGAAACTTCATACACTCGGCTGTGTAGCACCAAGGACATCTTGACTGTCAATGGAGAATTTCCAGGGCCAGCTATATATAGGCACAGAGGAGAGAGATTCAACGTAAATGTTCGAAATGAAGGAAAGTACAATGTCACCATTCACTGGCATGGTGTGAAGCAACCAAGGAATCCATGGTCTGATGGACCAAACTACGTGACACAGTGCCCAATCAAACCAGGGGCGAATTTCACTTACGAAATCATTTTGTCAGACGAGGAAGGAACCCTTTGGTGGCATGCCCACAGCGACTGGTCCCGTGCCACTGTCCATGGCCCACTCATTATTCTTCCTGAACAGGGAAAAGGTTACCCATTTCCTCAACCTCAGAACGAAGTTCCCATTGTTTTAGCATCATGGTTTAAAGGAGACGTGATGGAGATCATTGAAACTGCTCTTCAAAATGGTGGAGGACCCAATCAATCCGATGCTTTCACCATTAATGGCCAACCAGGAGATCTTTACGATTGCTCCACAGAAGGGACATTCAAAATGGTGGTTGATTATGGAAAAACTTATCTTCTTCGCATCATCAATGCTATTATGAACGAGGAAATGTTTTTCATGGTTGCAAATCATAGCTTGACTGTTGTGGGAACCGATGGGGCTTACATTAAGCCCATAAACACCAGCTATATCATGATAACCCCAGGACAAACAATGGATGTCCTCATCACGGCGGATCAGTCTCCTAGTTACTATTATATGGCATCTAGGGCATATGCTGTGGTAGGGGCATATGATAATACTACCACAACTGCAATAGTGCAATATAATGGAAACTACACTCCCCCATCAACACCTCCACTTCCCAATCTTCCCAATTATACAGACACTGAGGCAGCAGCCAATTTTACTGTGCGCCTTAGATCCCTAGCCAACGAAGACTACCCAGTAGACGTTCCACAAACTGTGGATACCCATATGTATATCACAATTTCTGTGAACACTTTGCCATGTGTAAACAATTCATGTGATGGGCCCGATGGCTCAAGGCTTGCTTCAAGCTTGAACAACATAAGTTTCGTGGAGCCATCAATCGATGTGTTACAGGCGTACTACAAGGGTATTAACGGTGTTTATGACACCGATTTCCCAAATGAGCCACCTTATTATTTCAATTTCACAGGGGACGATTTGCCCGATACTTTATTGACTCCAGAACGGGGGACTAAAGTCAAAGTGTTGGATTATAATTCTAATGTGGAGATAGTGTTCCAAGGGACTAATGTGCTGAATGCAGCGGACAATCATCCAATTCATTTGCATGGGTACAGCTTTTACGTGGTTGGAAATGGTACTGGCAACTTCGACAATAGCACTGATCCGACGAGGTACAATTTGGTTGATCCGCCTGAAGTCAATACCGTTGGAGTCCCCAAGAATGGATGGGTTGCCATCAGATTCAGAGCTGATAATCCAGGGGTATGGTTCATGCATTGTCATTTGGAAAGACATGCTAGCTGGGGCATGGACACTGTTCTAATTGTGAAGAATGGAACCACTTCATCAACTAGTATGCTGGAACCACCTAGTTACTTGAATCCTTGCTGA 1692 0.4427 MELKKKSLVFLLLNVLIRCIASQNVTTFYWVLNETSYTRLCSTKDILTVNGEFPGPAIYRHRGERFNVNVRNEGKYNVTIHWHGVKQPRNPWSDGPNYVTQCPIKPGANFTYEIILSDEEGTLWWHAHSDWSRATVHGPLIILPEQGKGYPFPQPQNEVPIVLASWFKGDVMEIIETALQNGGGPNQSDAFTINGQPGDLYDCSTEGTFKMVVDYGKTYLLRIINAIMNEEMFFMVANHSLTVVGTDGAYIKPINTSYIMITPGQTMDVLITADQSPSYYYMASRAYAVVGAYDNTTTTAIVQYNGNYTPPSTPPLPNLPNYTDTEAAANFTVRLRSLANEDYPVDVPQTVDTHMYITISVNTLPCVNNSCDGPDGSRLASSLNNISFVEPSIDVLQAYYKGINGVYDTDFPNEPPYYFNFTGDDLPDTLLTPERGTKVKVLDYNSNVEIVFQGTNVLNAADNHPIHLHGYSFYVVGNGTGNFDNSTDPTRYNLVDPPEVNTVGVPKNGWVAIRFRADNPGVWFMHCHLERHASWGMDTVLIVKNGTTSSTSMLEPPSYLNPC* 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1488 563 CDD CuRO_1_LCC_plant 28 144 IPR034288 GO:0005507
Vvi18g1488 563 Pfam Multicopper oxidase 158 307 IPR001117 -
Vvi18g1488 563 CDD CuRO_2_LCC_plant 159 304 IPR034285 -
Vvi18g1488 563 ProSitePatterns Multicopper oxidases signature 1. 521 541 IPR033138 -
Vvi18g1488 563 Gene3D - 156 340 IPR008972 -
Vvi18g1488 563 Pfam Multicopper oxidase 413 545 IPR011706 GO:0005507|GO:0016491
Vvi18g1488 563 NCBIfam laccase 26 563 IPR017761 GO:0046274|GO:0048046|GO:0052716
Vvi18g1488 563 ProSitePatterns Multicopper oxidases signature 2. 526 537 IPR002355 GO:0005507
Vvi18g1488 563 Gene3D - 365 563 IPR008972 -
Vvi18g1488 563 Pfam Multicopper oxidase 34 146 IPR011707 GO:0005507
Vvi18g1488 563 CDD CuRO_3_LCC_plant 406 546 IPR034289 GO:0005507
Vvi18g1488 563 PANTHER MULTI-COPPER OXIDASE 31 549 IPR045087 -
Vvi18g1488 563 SUPERFAMILY Cupredoxins 348 548 IPR008972 -
Vvi18g1488 563 Gene3D - 16 144 IPR008972 -
Vvi18g1488 563 SUPERFAMILY Cupredoxins 25 168 IPR008972 -
Vvi18g1488 563 SUPERFAMILY Cupredoxins 152 340 IPR008972 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1488 Vvi-Chr18 18497239 18499701 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1488 K05909 - vvi:100259656 1157.9