Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1462 ATGGCACGAGCAGACATAGCCCCTGGCGGTGTGATTCCAATGCACACTCACCCCGGCGCTTCAGAGATGATTCTTATAGCCAAGGGCTCTATCACTGCTGGTTTAATTTCTTCGGATAATACCGTCTACTTGAAGACACTCAAAGAGGGGGATATCATGGTTTTCCCTCAAGGGTTGCTGCATTTTCAGGTGAATACTGGTTGGACACAGGCACTTCTTTGGGTTAGCTTCGGTAGCTCGAGCCTTGGCCTCCAAATCCTTAGCAATGCGTTGTTTAGCAATAACTTGCCTTCTGAATTGATAGAGAAGACCACTTTTCTTTATGATGATGAAGTGAAAAGACTCAAGGCTCTTCTTGGTGGTTCTAGGTAA 372 0.4597 MARADIAPGGVIPMHTHPGASEMILIAKGSITAGLISSDNTVYLKTLKEGDIMVFPQGLLHFQVNTGWTQALLWVSFGSSSLGLQILSNALFSNNLPSELIEKTTFLYDDEVKRLKALLGGSR* 124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1462 123 Pfam Cupin 1 111 IPR006045 -
Vvi18g1462 123 SUPERFAMILY RmlC-like cupins 1 117 IPR011051 -
Vvi18g1462 123 FunFam Germin-like protein 1 122 - -
Vvi18g1462 123 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 1 116 - -
Vvi18g1462 123 ProSitePatterns Germin family signature. 10 23 IPR019780 GO:0030145
Vvi18g1462 123 PRINTS Germin signature 78 93 IPR001929 GO:0030145
Vvi18g1462 123 PRINTS Germin signature 15 35 IPR001929 GO:0030145
Vvi18g1462 123 PRINTS Germin signature 45 65 IPR001929 GO:0030145
Vvi18g1462 123 Gene3D Jelly Rolls 1 122 IPR014710 -
Vvi18g1462 123 SMART Cupin_1_3 1 113 IPR006045 -
Vvi18g1462 123 CDD cupin_OxOx 1 119 IPR001929 GO:0030145
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1462 Vvi-Chr18 17900324 17900695 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1462 1 123 Miscellaneous Gene Families AT5G20630 66.667 8.13e-56 171
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1462 - - vri:117905501 226.868