Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1461 ATGGATGGGAACAAATATGAGGCCTTGAAATGCCTGAAAATTGGGAAAGATACGTTGCAGGTAGGGGATCGAGCCTGTGCCTTGAAATTCATTACGAAAGTGCGTCGTCTTGATCTGAATCTTCCTGCTGACGATCTCTTATTGACGTTTGAACGAGAAACGGGTCAATCGGAGATGCCAGGCGGTGAGGCTAATGATGAGGCTTCGAAGGCCTCCGATCATCCTTCAGTTCGGCATAGGGTTCCATCGAGCGGGTCTTCAGTGTCGTCGTCTTCATCATCGATGGCATACACGAAGGAACAAATCTCAATTGTGAGGCAGGATAAGAAGAAGAAAGATTACTATGAGGCTCTAGAGTTGGAGAAGAGTTGTACTGTTGAGGATGTTCGGAAGGCTTATTGGAAACTATCTTTGAAGGTTCACACTAATAAGAACAAGGCTCCAGGTGTAGAGGAGGCTTTTAAGGCAGTGTCTGAAGCATTTTAG 486 0.4588 MDGNKYEALKCLKIGKDTLQVGDRACALKFITKVRRLDLNLPADDLLLTFERETGQSEMPGGEANDEASKASDHPSVRHRVPSSGSSVSSSSSSMAYTKEQISIVRQDKKKKDYYEALELEKSCTVEDVRKAYWKLSLKVHTNKNKAPGVEEAFKAVSEAF* 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1461 161 CDD DnaJ 113 161 IPR001623 -
Vvi18g1461 161 MobiDBLite consensus disorder prediction 79 98 - -
Vvi18g1461 161 Pfam DnaJ domain 113 161 IPR001623 -
Vvi18g1461 161 ProSiteProfiles dnaJ domain profile. 113 161 IPR001623 -
Vvi18g1461 161 Gene3D DnaJ domain 86 161 IPR036869 -
Vvi18g1461 161 MobiDBLite consensus disorder prediction 52 98 - -
Vvi18g1461 161 SUPERFAMILY Chaperone J-domain 78 161 IPR036869 -
Vvi18g1461 161 PRINTS DnaJ domain signature 115 133 IPR001623 -
Vvi18g1461 161 PRINTS DnaJ domain signature 133 148 IPR001623 -
Vvi18g1461 161 PRINTS DnaJ domain signature 149 161 IPR001623 -
Vvi18g1461 161 SMART dnaj_3 112 161 IPR001623 -
Vvi18g1461 161 PANTHER AT29763P-RELATED 1 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1461 Vvi-Chr18 17892156 17892641 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1461 K09518 - vvi:100262992 221.861