Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1447 ATGCTTCACATTCTTGCCTTGTTTTCCTTCCTCCTCGTCTCCTCCTCCCATGCAGCAGTCCAAGACTTCTGTGTGGCGGACTTGACAGCCCCACAAGGCCCTGCAGGCTACTCCTGCAAGACGCCTGCAGAAGTAACAGCTGATGATTTCGTGTATTCAGGCCTAAGTGTGCCTGGAAACACCTCAACCCTCTTCAATGCCGCCATCAACACAGCATTTGTTGAAAAGTTTCCAGGCTTGAATGGCCTTGGCGTCTCCATGGCACGAGCAGACATAGCCCCTGGCGGTGTGATTCCAATGCACACTCACCCCGGCGCTTCAGAGATAATTCTTATAGCCAAGGGCTCTGTCACTGCTGGTTTAATTTCTTCGGATAATACCGTCTACTTGAAGACACTCAAAGAGGGGGATATCATGGTTTTCCCTCAAGGGTTGCTGCATTTCCAGGTGAATACTGGTCGGACACAGGCACATCTTTGGGCTAGCTTCGGTAGCCCGAACCCTGGCCTCCAAATCCTCAGCAATGCGCTGTTTAGCAACAACTTGCCTTCTGAATTGATAGAGAAGACCACTTTTCTTGATGATGATGAAGTGAAAAGACTCAAGGCTCTTCTTGGTGGATCTGGGTAA 630 0.5 MLHILALFSFLLVSSSHAAVQDFCVADLTAPQGPAGYSCKTPAEVTADDFVYSGLSVPGNTSTLFNAAINTAFVEKFPGLNGLGVSMARADIAPGGVIPMHTHPGASEIILIAKGSVTAGLISSDNTVYLKTLKEGDIMVFPQGLLHFQVNTGRTQAHLWASFGSPNPGLQILSNALFSNNLPSELIEKTTFLDDDEVKRLKALLGGSG* 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1447 209 PRINTS Germin signature 131 151 IPR001929 GO:0030145
Vvi18g1447 209 PRINTS Germin signature 101 121 IPR001929 GO:0030145
Vvi18g1447 209 PRINTS Germin signature 164 179 IPR001929 GO:0030145
Vvi18g1447 209 Pfam Cupin 54 198 IPR006045 -
Vvi18g1447 209 SUPERFAMILY RmlC-like cupins 18 202 IPR011051 -
Vvi18g1447 209 SMART Cupin_1_3 53 199 IPR006045 -
Vvi18g1447 209 CDD cupin_OxOx 16 205 IPR001929 GO:0030145
Vvi18g1447 209 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 12 202 - -
Vvi18g1447 209 Gene3D Jelly Rolls 15 208 IPR014710 -
Vvi18g1447 209 FunFam Auxin-binding protein ABP19a 17 208 - -
Vvi18g1447 209 ProSitePatterns Germin family signature. 96 109 IPR019780 GO:0030145
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1447 Vvi-Chr18 17728372 17729001 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1447 1 208 Miscellaneous Gene Families AT5G20630 58.571 1.80e-86 252
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1447 - - vvi:100266519 410.609