Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1403 ATGGCTGGTCTACAAGAAAGTTCAGTTCTAAAAAGAGGCCAGAGAAAAAAAAAGACGCACAAATTTTCTGGTTCCTCATGTGAGATGAAGCTTTTAAACTCTATTGCACAGCTTGTAGAGCCTTTAGAAAGTTGCAAATTTGCAAGATTTTCTTTGCAGTATACAGCAGTAGAAGAGAAGAGGTTGAAGATGAGTGATGCAATGTTGTTTGCTTATGATAGAGAGCTTTACCAATGTAAGCTATTGCGCCAATGGAGAAGAGGGCCCTTGATATTACTAGATGTGGAGTCATTGGATAGGAATTGCGGCACATCTTGTACCGTATATGGAATGCATTATGATGGGATTGTTTATGAAGCTGTTGTCACATGGAATACGCTCATAGATTCTCACTGTAAGTCTGGGCACCACAATAAAGCAGAGGAGTTGTTTGAGGCAATGCAGAATAGTGGTTGCTCTCCTTTCACTACAACATATAATATTATGATTAATTCTTTTGGGGAGCAGGAGAGATGGGATGATGTGAAGACTTTGTTGGGGAAGATGCAGATTTCTTGGGACGGCTGCCACTCACGCACATGGGGACTCCACTCTCACGCACAGCCATGGACAACCTCACCTAGGAGATCTCCATGCTGCAACACGGCTCCGGAAAAAGACCCACTTTCCATGAGCTGCAACTTCAAAGAAGTCATACATAGCCCAGATTCTTATATAAATCTCCGACAACATGCAGCATATAAAGCATCAGATTGGAAGGATTAA 765 0.4209 MAGLQESSVLKRGQRKKKTHKFSGSSCEMKLLNSIAQLVEPLESCKFARFSLQYTAVEEKRLKMSDAMLFAYDRELYQCKLLRQWRRGPLILLDVESLDRNCGTSCTVYGMHYDGIVYEAVVTWNTLIDSHCKSGHHNKAEELFEAMQNSGCSPFTTTYNIMINSFGEQERWDDVKTLLGKMQISWDGCHSRTWGLHSHAQPWTTSPRRSPCCNTAPEKDPLSMSCNFKEVIHSPDSYINLRQHAAYKASDWKD* 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1403 254 MobiDBLite consensus disorder prediction 1 21 - -
Vvi18g1403 254 Gene3D Tetratricopeptide repeat domain 95 185 IPR011990 GO:0005515
Vvi18g1403 254 PANTHER RESPIRATORY COMPLEX I CHAPERONE (CIA84), PUTATIVE (AFU_ORTHOLOGUE AFUA_2G06020)-RELATED 121 186 - -
Vvi18g1403 254 NCBIfam pentatricopeptide repeat 122 154 IPR002885 -
Vvi18g1403 254 NCBIfam pentatricopeptide repeat 158 183 IPR002885 -
Vvi18g1403 254 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 120 154 IPR002885 -
Vvi18g1403 254 Pfam PPR repeat family 121 166 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1403 Vvi-Chr18 15160583 15161347 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1403 121 205 Glycosyltransferase AT1G05670 30.588 6.05e-06 45.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1403 - - vvi:100263329 129.028