Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vvi18g1400 | ATGGACATTCAACTTGTATCTTTTAATCGGAGCAACTTTTTGACTAAATTGTGGCAGAGTCATCAGTTTCGAGTAATTGGTACTCCCCAAAACATATATCGTGGTTCTTGTTATTTACGAGAAGGATCAACTCATAGAAGTATAAGTTGTTCAATGAAGTCTTATCGACTATCAGAGCTCTCTCAGGCTGAAGTCAACAGCCTCAAGGCTCGTCCTCGTATTGATTTCTCTTCCATTTTCAATGTGGTTCACCCCATTGTTGATGATGTACGCAGTAGAGGTGATGCTGCTGTTAAAGATTATACTACACGTTTTGACAAAGTTGAACTAGATAGATTAATTGAAAATGTTGCTGAACTTCCAGATCCAGAGCTTGATGCAGGTATAAAAGAAGCATTTGATGTGGCATATGATAACATTTTTGCATTTCATGCTGCTCAAAAGTCAGCTGAAAAAATTGTTGAGAACATGAAAGGTGTTAAATGCAAACGGGTTGCAAGGAGCATTGCTTCTGTTGGTCTTTATGTTCCAGGAGGAACTGCAGTGTTACCTTCAACAGCTCTGATGCTTTCAGTTCCTGCACAGATTGCTGGGTGTAAGACTGTTGTCCTTGCAACTCCCCCTAGTCAAGATGGCGGCATCTGCAAGGAGGTACTCTATTGTGCCAAGAAAGCTGGTGTGACTCATATCCTCAAAGCTGGAGGGGCACAGGCCATTGCTGCCATGGCATGGGGGACAACATCATGCCCTAAGGTGGAAAAGATTTTTGGCCCTGGAAATCAGTATGTCACGGCTGCAAAAATGATTCTCCAAAATAGTGAAGCTATGGTTTCAATTGATATGCCTGCGGGTCCATCAGAAGTTCTAGTCATTGCCGACAAACATGCTAATCCTGTTCATATTGCTGCAGATTTGTTGTCCCAGGCTGAGCATGGCCCTGATAGTCAGGTTGTTCTTGTAATTGCTGGGGATGGCGTGGACCTAAGGGCTATTGAGGAGGAAATCAGCAAGCAGTGCCAAAGCCTTCCAAGAGGAGAGTTTGCTTCAAAAGCTTTGAGCCACAGTTTCACTGTGTTTGCTCGCAATATGGTTGAGGCTATCTCCTTTTCAAACTTATATGCACCTGAGCATCTGATAATTAATGTGAAAGATGCTGAGAAGTGGGAGAATTTCATTGAGAATGCAGGTTCTGTGTTTTTAGGGCAGTGGACACCGGAAAGTGTGGGGGATTATGCAAGTGGAACAAACCATGTCCTTCCAACATATGGCTATGCACGGATGTATGGCGGGTTGTCTCTCGACTCCTTCTTGAAGTATATGACAGTACAGTCTTTGACAGAGGAAGGCCTGAGGAAGCTTGGCCCATATGTGGAAGCCATGGCTGAAGTTGAAGGACTGGAAGCCCACAAGAGAGCTGTAACTCTAAGACTACAGGATATTGAAGCAAGGCAAGTGCCCAATATGAGATGA | 1470 | 0.4381 | MDIQLVSFNRSNFLTKLWQSHQFRVIGTPQNIYRGSCYLREGSTHRSISCSMKSYRLSELSQAEVNSLKARPRIDFSSIFNVVHPIVDDVRSRGDAAVKDYTTRFDKVELDRLIENVAELPDPELDAGIKEAFDVAYDNIFAFHAAQKSAEKIVENMKGVKCKRVARSIASVGLYVPGGTAVLPSTALMLSVPAQIAGCKTVVLATPPSQDGGICKEVLYCAKKAGVTHILKAGGAQAIAAMAWGTTSCPKVEKIFGPGNQYVTAAKMILQNSEAMVSIDMPAGPSEVLVIADKHANPVHIAADLLSQAEHGPDSQVVLVIAGDGVDLRAIEEEISKQCQSLPRGEFASKALSHSFTVFARNMVEAISFSNLYAPEHLIINVKDAEKWENFIENAGSVFLGQWTPESVGDYASGTNHVLPTYGYARMYGGLSLDSFLKYMTVQSLTEEGLRKLGPYVEAMAEVEGLEAHKRAVTLRLQDIEARQVPNMR* | 490 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vvi18g1400 | 489 | Coils | Coil | 463 | 483 | - | - | |
| Vvi18g1400 | 489 | ProSitePatterns | Histidinol dehydrogenase signature. | 279 | 311 | IPR001692 | GO:0016616 | |
| Vvi18g1400 | 489 | PANTHER | HISTIDINOL DEHYDROGENASE HDH | 1 | 482 | IPR012131 | GO:0016616|GO:0046872|GO:0051287 | |
| Vvi18g1400 | 489 | FunFam | Histidinol dehydrogenase, chloroplastic | 81 | 285 | - | - | |
| Vvi18g1400 | 489 | FunFam | Histidinol dehydrogenase, chloroplastic | 436 | 479 | - | - | |
| Vvi18g1400 | 489 | CDD | Histidinol_dh | 79 | 469 | IPR012131 | GO:0016616|GO:0046872|GO:0051287 | |
| Vvi18g1400 | 489 | Gene3D | Nitrogenase molybdenum iron protein domain | 81 | 435 | - | - | |
| Vvi18g1400 | 489 | SUPERFAMILY | ALDH-like | 77 | 477 | IPR016161 | GO:0016491 | |
| Vvi18g1400 | 489 | Pfam | Histidinol dehydrogenase | 71 | 477 | IPR012131 | GO:0016616|GO:0046872|GO:0051287 | |
| Vvi18g1400 | 489 | PRINTS | Histidinol dehydrogenase signature | 217 | 243 | IPR012131 | GO:0016616|GO:0046872|GO:0051287 | |
| Vvi18g1400 | 489 | PRINTS | Histidinol dehydrogenase signature | 279 | 300 | IPR012131 | GO:0016616|GO:0046872|GO:0051287 | |
| Vvi18g1400 | 489 | PRINTS | Histidinol dehydrogenase signature | 83 | 107 | IPR012131 | GO:0016616|GO:0046872|GO:0051287 | |
| Vvi18g1400 | 489 | PRINTS | Histidinol dehydrogenase signature | 182 | 208 | IPR012131 | GO:0016616|GO:0046872|GO:0051287 | |
| Vvi18g1400 | 489 | PRINTS | Histidinol dehydrogenase signature | 247 | 272 | IPR012131 | GO:0016616|GO:0046872|GO:0051287 | |
| Vvi18g1400 | 489 | PRINTS | Histidinol dehydrogenase signature | 411 | 429 | IPR012131 | GO:0016616|GO:0046872|GO:0051287 | |
| Vvi18g1400 | 489 | PRINTS | Histidinol dehydrogenase signature | 301 | 320 | IPR012131 | GO:0016616|GO:0046872|GO:0051287 | |
| Vvi18g1400 | 489 | PRINTS | Histidinol dehydrogenase signature | 370 | 395 | IPR012131 | GO:0016616|GO:0046872|GO:0051287 | |
| Vvi18g1400 | 489 | Hamap | Histidinol dehydrogenase [hisD]. | 58 | 478 | IPR012131 | GO:0016616|GO:0046872|GO:0051287 | |
| Vvi18g1400 | 489 | Gene3D | Nitrogenase molybdenum iron protein domain | 283 | 401 | - | - | |
| Vvi18g1400 | 489 | FunFam | Histidinol dehydrogenase, chloroplastic | 286 | 401 | - | - | |
| Vvi18g1400 | 489 | NCBIfam | histidinol dehydrogenase | 83 | 476 | IPR012131 | GO:0016616|GO:0046872|GO:0051287 | |
| Vvi18g1400 | 489 | Gene3D | - | 436 | 481 | - | - |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vvi18g1400 | K00013 | - | vvi:100253086 | 958.747 |