Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1398 ATGGACTCCATAATGTTCGCAGCTCTCGAAAAGATCTGTTCCCAAGGCGCGAATGGCCTCGCTCTCCAGTCTTTGTGGCCGAATCTCCATGTTGCTCTCTCCTCCGCCGAACTCAACCTCTCGTCTGGCGTCAAGGCAGCAATTTGGGCTAACCTCTTGAAAACTCTGGGCCTTGGGTTCCAGTCGCGGAATGTCTTTCGTGATGCCGATGATCCTGCAATTCAACCGATTAAGCAATGCAAGAAGTTGAATTTGAAGATTGTTGCTACTGAGCATCTTCATGACTCGTTCGTTGGCCTCTATGATGCGAAGGCATCCATCGTCACCGGCATCTCGGCGGTGCAGCGCCGCGTGCTTGAGCAACTCACCACTGCTAAAACAAATGGAATAACCCAAAGTCAACTATGTGAGGAGTTTGGCATAAAAGCGAACAACATGTTTTATGTACTAAGGAACCTTGAATGCCGAGAGTTGATTGTGAGGCAATCATCTATTGTGAGGGAGAAGGAGTTGCTTCCAACCAAACTGGAAGATGTTGCGCACTGGTGGTTTATAGACCTTGTCTTGGGTGGAGAGTCTTTATTGAACTCTATGAACAAGAGCAAGGAACGCTTCTTGGGTTTCAGGAGCTCCCGAAATTCCCTTGTTTGGTGGGTTGACAAGATGAGAGGTCACAAACTCATTCCTTAA 690 0.4797 MDSIMFAALEKICSQGANGLALQSLWPNLHVALSSAELNLSSGVKAAIWANLLKTLGLGFQSRNVFRDADDPAIQPIKQCKKLNLKIVATEHLHDSFVGLYDAKASIVTGISAVQRRVLEQLTTAKTNGITQSQLCEEFGIKANNMFYVLRNLECRELIVRQSSIVREKELLPTKLEDVAHWWFIDLVLGGESLLNSMNKSKERFLGFRSSRNSLVWWVDKMRGHKLIP* 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1398 229 PANTHER GENERAL TRANSCRIPTION FACTOR 3C POLYPEPTIDE 1 1 166 IPR044210 GO:0000127|GO:0003677|GO:0006384
Vvi18g1398 229 SUPERFAMILY "Winged helix" DNA-binding domain 105 166 IPR036390 -
Vvi18g1398 229 Gene3D - 125 229 - -
Vvi18g1398 229 Pfam B-block binding subunit of TFIIIC 113 169 IPR007309 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1398 Vvi-Chr18 14293747 14294436 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1398 K15199 - vvi:100267761 284.648