Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1371 AACTGTACACAGTTGGAGTTTCTATATCTTAATGATAACCAGCTAGCTGGTGAGCTTCCAACTTCAGTTGCGAATCTTTCTACTCATCTCCTTGAATTTTGCTTTGGCAGCAATTTTCTGACTGGTAGCATTCCCCGAGGATTTGAAAGATTTCAAAATCTCTGGGCCTTGGACATACACCAAAATCTTTTCACAGGTATGATACCAAATTCCCTAGGAAAACTTCAGCAACTACAGAGATTATTGGTTGATAATAATATGTTATCCGGAGAAATTCCAGATATCTTTGGCAATCTTACACGACTCTTTCTGCTGACAATGGGGTACAACCAGTTCTCTGGTAGAATCCCCACAAGTATTGGAGAGTGCCAGAATTTAAAGAGACTGGGTCTAAGACAGAACAAGCTCAATGGTAGCATACCCAAGGAGATTTTCAGACTTCATGATATAATCGAGATATATTTGGCGCATAATGAACTAAGTGGTTCTCAGCCCGCCCTAGTTGAAAGTTTGGAACACCTTGAGGTCCTGGATGTTTCTAATAACCAGCTGTCAGGAAATATTTCAACAACAATTGGTTCTTGCTTAAGTCTGCGTAGTTTCAATATTGCCACAAACAAACTCTCAGGTGCCATACCAGTGTCGATGGGTAAATTAATAGCATTGGAGAGCTTGGATCTTTCTTCCAACAGTCTGACTGGACAAATCCCCGAAGAGTTACAGGATCTTTTGTATTTTCAGATCTTAAATTTGTCTTTCAATGACTTGGAAGGACCAGTTCCAAGAAAAGGTGTTTTCATGAACCTTACCTGGCTTTCTCTTACAGGAAATAATAAGCTCTGTGGTAGTGACCCTGAGGCTGCAGGAAAGCTGAGAATCCCCACATGTATCACAAAAGTGAAGTCAAATAGGCATTTGATACTCAAGATTGTGATGCCAGTTGCCAGCTTTACCCTGTTAATGTGTGCAGCCTGTATCACATGGATGCTGATCACCCAAAACAAGAAAAAGAGGAGAGGAACAACTTTTCCATCTCCTTGTTTCAAGGCGTTGCCGCCAAAGATATCATACTCTGACATCCAGCATGCTACAAATGATTTCTCCGCAGAAAATTGGGTAGGAAAGGGAGGCTTTGGATCTGTATATAAAGGAGTTTTCAGAACTGGTGAAAATGGGGTCAACACCATTTTTGCAGTGAAGGTTATCGACTTACAACAAGGTGAAGCTTCTGAGAATTTCAATGCAGAGATTTCAACAAGTAGGGATGTCTACAGCTATGGAATTTTGCTGCTTGAGATATTCACAGCAAAGAAACCCACAGATGAAATGTTTCAGGAAGGTTTAGATCAGCATAAGTTGGCATCCGCTCTGCTCATAAATCAATTTTTAGATATGGCTGACAAACGGCTTTTTAACAATGATGCTTGTACAGACAATAGCATCTTCACTAGTTCTTCTGGTGACTTTAACAGCATCGGTACTAGCAGCAATACTTTGTCCCATTGGAAAATCAAAACTGAAGAGTGTATTACTGCCATAATACATGTTGGTTTGTCATGTGCTGCTCATTCAACCACAGATCGTTCAACCATGAGAGAAGCATTGACAAAGTAG 1614 0.4046 NCTQLEFLYLNDNQLAGELPTSVANLSTHLLEFCFGSNFLTGSIPRGFERFQNLWALDIHQNLFTGMIPNSLGKLQQLQRLLVDNNMLSGEIPDIFGNLTRLFLLTMGYNQFSGRIPTSIGECQNLKRLGLRQNKLNGSIPKEIFRLHDIIEIYLAHNELSGSQPALVESLEHLEVLDVSNNQLSGNISTTIGSCLSLRSFNIATNKLSGAIPVSMGKLIALESLDLSSNSLTGQIPEELQDLLYFQILNLSFNDLEGPVPRKGVFMNLTWLSLTGNNKLCGSDPEAAGKLRIPTCITKVKSNRHLILKIVMPVASFTLLMCAACITWMLITQNKKKRRGTTFPSPCFKALPPKISYSDIQHATNDFSAENWVGKGGFGSVYKGVFRTGENGVNTIFAVKVIDLQQGEASENFNAEISTSRDVYSYGILLLEIFTAKKPTDEMFQEGLDQHKLASALLINQFLDMADKRLFNNDACTDNSIFTSSSGDFNSIGTSSNTLSHWKIKTEECITAIIHVGLSCAAHSTTDRSTMREALTK* 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1371 537 FunFam Predicted protein 1 291 - -
Vvi18g1371 537 Gene3D Ribonuclease Inhibitor 1 289 IPR032675 -
Vvi18g1371 537 PRINTS Leucine-rich repeat signature 174 187 - -
Vvi18g1371 537 PRINTS Leucine-rich repeat signature 219 232 - -
Vvi18g1371 537 Pfam Leucine rich repeat 125 184 IPR001611 GO:0005515
Vvi18g1371 537 SUPERFAMILY Protein kinase-like (PK-like) 342 419 IPR011009 -
Vvi18g1371 537 FunFam Uncharacterized protein 328 425 - -
Vvi18g1371 537 PANTHER OS04G0122200 PROTEIN 1 419 - -
Vvi18g1371 537 ProSitePatterns Protein kinases ATP-binding region signature. 373 400 IPR017441 GO:0005524
Vvi18g1371 537 Pfam Leucine Rich Repeat 222 242 IPR001611 GO:0005515
Vvi18g1371 537 SUPERFAMILY Protein kinase-like (PK-like) 416 535 IPR011009 -
Vvi18g1371 537 SUPERFAMILY L domain-like 28 283 - -
Vvi18g1371 537 Gene3D Phosphorylase Kinase; domain 1 328 425 - -
Vvi18g1371 537 FunFam - 413 537 - -
Vvi18g1371 537 SMART LRR_typ_2 171 195 IPR003591 -
Vvi18g1371 537 SMART LRR_typ_2 123 147 IPR003591 -
Vvi18g1371 537 SMART LRR_typ_2 219 242 IPR003591 -
Vvi18g1371 537 SMART LRR_typ_2 75 98 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1371 Vvi-Chr18 13945801 13947522 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1371 418 528 Receptor kinase-like Gene Family AT3G47570 29.730 7.72e-08 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1371 - - vvi:100260240 786.949