Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1362 ATGCCCGAATCCATCCACTCTTCCTCAACTCCTGATATGGACTGCTCCTCTGTGAGGTTTGTTCATTCAATAAACGAGGCCGGTCGCCTTCTTCCTTCTGCCAGCCGCTGGAACTCCATAGCAATTGACTACAACGTCCTGCCTAGATCTTCCATTGCATATGATTCATTACCCTCCGTCTACTCTAAGTCTGTTGAGTTCAATCTTGTCGTCAGAGATAAGACCCACCTCAAACGTTTTGTTTACATCTCAGTTTTTCTGGTCTTGGCCATTGTTGCGCTTGTTGTACTGCTGCATTTTTTGCCTCACAAACATGGCCACCATGGTTCCTCTAAGAACCTCACACATGCAATCAACCAAGCTCTCACCTTCTTCGAAGCTCAAAAGTCTGGGTATCTCCCAAAGAACAGTTCTGTAAGTTTTCGAGGGGATTCTGGTTTGCAAGACGGGAATTCAAGCGGCCATAATCTTGTCGGTGGTTTTTATGATTCAGGAAACAACATAAAATTCAGTTTTCCTACTGCATATACCATTACCCTCTTGAGTTGGACTGTGATTGAATATCATCAGAAGTATGCGGATATCGGTGAGCTTGAACATGTCAAGGACATCATCAAATGGGGCAGTGACTACTTGCTCAAGCTCTTTATTCCTCCAATTAAATCTACTTCCAGTTCTACTACCATTCTGTATTCTCAGGTTGGAAGTACTAGTAATGATGCATTTAACGATGTGAACTGCTGGCAAAGGCCTGAGGACATGAGCTATTTGAGACCAGTTTCTATTTGCAACAGCACTGCTTCTGATCTAGCAGGGGAAATTGTTGCAGCATTATCAGCTGCATCACTGGTATTCAGAGAAGATACGGGTTATTCAGGAGAATTAATCAAAGGAGCTGAGAAATTGTTTGAGCTTGCAACTGCAGTAGACCCTCGTATGCAAGGAACTTACACCAGGTCTGATGCTTGTGGAGGACAAGCAAGACAGTTCTATAACTCATCAGGCTTCGAAGATGAGCTGGTTTGGGCAGGGACTTGGCTGTTCTTCGCCACTGGAAACACCACTTACCTTAGAAATGCGACGGAGAAGTTCGCTTCTGCAGAGACTGAAGAAATGCCTTCTGAGAAATGGATTTTTTATTGGAACAATAAGATTACCGCCAATGCGGTTTTGCTAACCCGGCTTAGATTCTTCCTTGATCCTGGGTACCCATATGCGGCTGCTCTGCAACCATCAACAACCAGAACTGACTTGCTCATGTGCTCCTATCTTTCTAACTATATCTTCAACAACACACCAGGTGGATTGATCCTCTTAAGACCTGATCATGGTAAACCACTCCAGTTTGCTGCAACAGCGTCTTTTCTTAGTAAACTCTATAGCGATTACCTTGATCTGTTGCGTCAATCAGGTGGGAGTTGCGGTGGTTACAACTACACCCTTGAAATGTTGCAAAGCTTCTCCATGTCTCAGGTTAATTACATTCTGGGTGATAATCCTATGAAGATGAGCTATGTGGTGGGATTTGGAGACAGCTATCCAATCCATGTTCACCATAGGAGTGCGTCGATCCCTTGGGATGGTCATCAATATTCTTGTGAGGATGGAGATAAATGGCTACACTCTGAAGATCCAAATCCAAATACCCTTTTGGGAGCCATGGTAGGAGGACCAGACCAACATGACAAATTCTTAGATGATAGGAAGAAACCATGGTTCACAGAACCAAGCATATCAAGCAATGCTGGTTTAGTTGCTGCACTTATTGCGCTTCATGATCATCCTTGTGAGTCTTCAAATTCTAATTGTGTTGGGTCAGGTATAGATAAGATGGGCATCTTTACAAATATCCATTCATTTCCTTCCCCTCCCTGA 1875 0.4379 MPESIHSSSTPDMDCSSVRFVHSINEAGRLLPSASRWNSIAIDYNVLPRSSIAYDSLPSVYSKSVEFNLVVRDKTHLKRFVYISVFLVLAIVALVVLLHFLPHKHGHHGSSKNLTHAINQALTFFEAQKSGYLPKNSSVSFRGDSGLQDGNSSGHNLVGGFYDSGNNIKFSFPTAYTITLLSWTVIEYHQKYADIGELEHVKDIIKWGSDYLLKLFIPPIKSTSSSTTILYSQVGSTSNDAFNDVNCWQRPEDMSYLRPVSICNSTASDLAGEIVAALSAASLVFREDTGYSGELIKGAEKLFELATAVDPRMQGTYTRSDACGGQARQFYNSSGFEDELVWAGTWLFFATGNTTYLRNATEKFASAETEEMPSEKWIFYWNNKITANAVLLTRLRFFLDPGYPYAAALQPSTTRTDLLMCSYLSNYIFNNTPGGLILLRPDHGKPLQFAATASFLSKLYSDYLDLLRQSGGSCGGYNYTLEMLQSFSMSQVNYILGDNPMKMSYVVGFGDSYPIHVHHRSASIPWDGHQYSCEDGDKWLHSEDPNPNTLLGAMVGGPDQHDKFLDDRKKPWFTEPSISSNAGLVAALIALHDHPCESSNSNCVGSGIDKMGIFTNIHSFPSPP* 625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1362 624 SUPERFAMILY Six-hairpin glycosidases 111 594 IPR008928 GO:0005975
Vvi18g1362 624 PANTHER ENDO-1,4-BETA-GLUCANASE 86 593 - -
Vvi18g1362 624 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 2. 494 520 IPR018221 -
Vvi18g1362 624 Gene3D - 109 603 IPR012341 GO:0005975
Vvi18g1362 624 Pfam Glycosyl hydrolase family 9 117 588 IPR001701 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1362 Vvi-Chr18 13833441 13835790 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1362 62 617 Glycoside Hydrolase AT5G49720 44.737 1.01e-142 426
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1362 K01179 - vvi:100243756 1251.88