Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1354 ATGGTGCTGATATCGGCCGTACGTGATTATATGTCCCGGATGTTGCAGGACATCTCGGGCATGAAGGTTCTTATCCTCGATTCTCAAACGGTTAGTATTGTGAGTGTTGTTTATTCTCAATCAGAGCTTCTTCAGAAAGAAGTGTTTCTTGTAGAATTGGTGGATTCCATTTCCATGTCGAAGGAATCCATGTCGCATCTCAAAGCTGTCTATTTCCTCAGGCCAACCTCGGAGAATATTCAGCATTTACGACGGCAGTTTGCTAGTCCTAGATTTGGAGAGTATCACCTGTTTTTTTCCAACATTTTAAAGGATACTCAGATTCATATTTTAGCTGATTCGGATGAGCAGGAGGTTGTCCAGCAAGTTCAGGAGTTCTATGCAGACTTTGTTGCAATAGATCCTTTCCATTTTACTTTGAACATGCCATCGAATCACATTTATATGCTCCCAGCAGTTGTAGATCCTTCAGGTTTGCAGCACTACTGTGATCGAGTTGTTGATGGCATTGGGGCAATTTTCTTGGCTTTAAAACGACGGCCTGTTATTCGATATCAACGAACCTCTGATATTGCAAAAAGAATTGCACAGGAAACAGCGAAACTGATGTACCAGCAGGAAAGTGGTCTTTTTGACTTCAGACGAACGGAAGTATCTCCATTATTGCTGGTAGTTGATAGGAGGGATGACCCTGTCACTCCACTTCTCAATCAATGGACATATCAGGCAATGGTTCATGAGTTAATAGGTATCCAAGATAATAAAGTAGACCTGACAAACATTGGCAAGTTTCCTAAAGATCAGCAGGAGGTTGTCCTGTCGTCTGAACAAGATGCATTTTTTAAAGCTAACATGTATGAGAACTTTGGAGATATTGGAATGAATATCAAAAGAATGGTGGATGAGTTTCAGCAAATTTCAAAAAGTAACCAGAATATTCAGACAGTAGAAGATATGGCTAAATTTGTTGACAATTATCCCGAGTACAAAAAAATGCATGGCAATGTTTCAAAGCATGTTACTATGGTCACAGAAATGAGCAAGATAGTTGAAGAGCGAAAGCTTATGTTAGTTTCACAAACGGAACAAGATTTGGCTTGCAATGGTGGGCAAGTGGCCGCATTTGAGGCTGTGACAAATCTCTTAAATGATGAAAGAGTTTCTGATGTTGATCGCTTACGCCTAGTGATGTTGTATGCTTTGCGCTATGAGAAGGAAAGCCCTGTTCAACTGATGCAGCTTTTCAACAAGTTGGCATCCCGGTCTGCAAAATACAAGCCTGGGCTTGTCCAATTCCTCTTGAAGCAAGCAGGTGTTGATAAGCGAATTGGGGATCTATATGGAAATCGAGATCTCTTAAATATTGCTCGTAACATGGCTCGTGGGCTGAAGGGGGTTGAGAATGTGTACACCCAACACCAGCCTCTTCTATTCCAAACTATGGAAAGCATCAACAAAGGGCGGTTAAGAGATGTGGACTACCCCTTCATTGGAAATCACTTTCAGCAGGGCAGGCCGCAAGATGTGGTGATTTTCATCGTTGGTGGGACAACATATGAAGAGTCACGTTCCATTGCTCTACAAAATGCCAGCAATTCTGGGATTCGTTTTATACTTGGTGGATCTGTGGTTCTCAATTCTAAGAGGTTTCTGAAGGACCTGGAAGAAGCTCAGAGGATAGCACGCACCAGCACCAATGTGGTTTGA 1707 0.4206 MVLISAVRDYMSRMLQDISGMKVLILDSQTVSIVSVVYSQSELLQKEVFLVELVDSISMSKESMSHLKAVYFLRPTSENIQHLRRQFASPRFGEYHLFFSNILKDTQIHILADSDEQEVVQQVQEFYADFVAIDPFHFTLNMPSNHIYMLPAVVDPSGLQHYCDRVVDGIGAIFLALKRRPVIRYQRTSDIAKRIAQETAKLMYQQESGLFDFRRTEVSPLLLVVDRRDDPVTPLLNQWTYQAMVHELIGIQDNKVDLTNIGKFPKDQQEVVLSSEQDAFFKANMYENFGDIGMNIKRMVDEFQQISKSNQNIQTVEDMAKFVDNYPEYKKMHGNVSKHVTMVTEMSKIVEERKLMLVSQTEQDLACNGGQVAAFEAVTNLLNDERVSDVDRLRLVMLYALRYEKESPVQLMQLFNKLASRSAKYKPGLVQFLLKQAGVDKRIGDLYGNRDLLNIARNMARGLKGVENVYTQHQPLLFQTMESINKGRLRDVDYPFIGNHFQQGRPQDVVIFIVGGTTYEESRSIALQNASNSGIRFILGGSVVLNSKRFLKDLEEAQRIARTSTNVV* 569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1354 568 FunFam Vacuolar sorting protein 3 128 - -
Vvi18g1354 568 Gene3D Syntaxin Binding Protein 1; Chain A, domain 2 238 351 IPR043127 -
Vvi18g1354 568 Gene3D - 4 128 IPR043154 -
Vvi18g1354 568 FunFam Vacuolar protein sorting-associated protein 45 homolog 353 474 - -
Vvi18g1354 568 Pfam Sec1 family 22 553 IPR001619 GO:0016192
Vvi18g1354 568 Gene3D - 353 474 - -
Vvi18g1354 568 PIRSF VPS45_Sec1 1 565 IPR001619 GO:0016192
Vvi18g1354 568 Gene3D - 138 555 IPR027482 -
Vvi18g1354 568 SUPERFAMILY Sec1/munc18-like (SM) proteins 3 556 IPR036045 -
Vvi18g1354 568 PANTHER VESICLE PROTEIN SORTING-ASSOCIATED 7 554 IPR001619 GO:0016192
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1354 Vvi-Chr18 13720719 13730113 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1354 K12479 - vvi:100243832 1097.8