Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1353 ATGAGAGGACCCTCCCCTAGCCCTTTAGAGACTCGCCTCCGACTGTCTGCTTCTGGTGAGGAGGGAAGCAAGAGAAGGCTCCAAAGAAGTAAAGACTCTAAAGATGTTGAGAAGGCCTCTCATGTTCCCATTCAAGAAAGAAATTCAAATTGCAAATTTCCTACGTTGAAACTTGTACTTGTTATTATTATCTGTGGAACTTTCGTGACATTGCTCCACTCTCCAGCGGTCCATAATACAGATGGTCCATCTGATTCTTTATCTCGGAAAAGTTTTGTAGACAGATGGATAAGGGATGCTGATGATCCACGCTATACTTCATCATTGCAAATTAACTGGGACCAAATCTCCAAAGTCATTGAGAAATTGGATGACAGGAATGAATATCAGGGAGTAGGCTTGTTAAACTTCAATGACAAAGAAAATGATGATTGGAAGCAACTGTTACCAGATGCCGAGCATATTGTTCTGCATCTGGACCATGTCTTGAACAACATTACTTGGGAATCTCTATACCCTGAATGGATAGATGAGGAGGAAGAATTTGAGGTTCCCAGTTGTCCTTCTCTGCCTAGACTTCCGGTCCCTGGAAAGCCACGGATAGATCTCATTGCTGTTAAGCTTCCCTGCAACAAGTCTGGAGACTGGGCAAGAGATGTGGCCCGTCTGCACTTGCAGCTTGCAGCGGCAAGGCTTGCTGCCACTGCTAAAAGTTATCATCCAGTCCGTGTACTTTTGGTGACCGAGTGCTTCCCAATCCCAAACCTCTTCACTTGCAAGGAACTTGTTGCACGTGAAGGAAATATATGGCTGTACGAACCCAACCTGAATACGATGAGGGGAAAGCTTCAGCTTCCAGTTGGATCCTGTGAACTTTCAGTTCCTCTCCAGGCTAAAGTAGATCGGTTTTACTCAGCATCTGCACACCGAGAAGCATATGCAACAATCCTACATTCTGCACATGTATATGTCTGTGGGGCCATTGCTGCAGCTCAGAGCATCCGCATGGCAGGTTCAACACGGGATCTTGTAATTCTTGTTGATAAAACAATCAGTGAGTATCATAGAGGAGGCTTAGAAGCGGCAGGTTGGAAAATTCATACTATTGAAAGAATTAGGAATCCAAAAGCTGAACGTGATGCCTACAATGAATGGAACTACAGCAAATTCCGTCTCTGGCAGTTGACAGACTATGATAAGATCATTTTCATTGATGCTGACCTGCTTATACTTAGGAATATTGACTTCCTATTTGAGATGCCAGAAATATCTGCGATAGGAAACAACGCCACCCTGTTCAACTCAGGTGTGATGGTGATTGAGCCATCAAATTGCACATTCCAGTTGTTGATGGATCACATCAATGAGATAGAGTCTTACAATGGTGGGGACCAGGGGTATCTGAACGAGATCTTCACATGGTGGCACCGGATTCCAAAACACATGAACTTTTTGAAGCACTTCTGGGAAGGTGACGAGGAGGAGAAGAAAGAGATGAAAACTCGTCTCTTTGGAGCTGATCCTCCAGTTCTTTATGTCCTCCACTACCTGGGTTTGAAGCCATGGCTGTGCTTTCGGGACTACGACTGCAACTGGAATGTGGACATATTGCAGGAGTTTGCAAGTAATGTTGCGCATAAAAGGTGGTGGAAGATTCACGATGCCATGCCAGAAAACCTGCAAAAGTTCTGCTTGCTTAGGTCCAAGCAGAAGGCGGCATTGGAATGGGATCGAAGACAAGCAGAGAAGGGCAATTACACAGATGGGCATTGGAAAATTAAGATAAAAGATCCACGCTTACAGACATGCTTCGAAGATTTCTGCTTCTGGGAGAGCATGTTATGGCACTGGGGTGAAACAAATTGGACGGATAATGCAACTGCTACTCTGCCACCGCCTACAACGACCACGGCATCTCTCCCTTCTTTATAA 1932 0.4493 MRGPSPSPLETRLRLSASGEEGSKRRLQRSKDSKDVEKASHVPIQERNSNCKFPTLKLVLVIIICGTFVTLLHSPAVHNTDGPSDSLSRKSFVDRWIRDADDPRYTSSLQINWDQISKVIEKLDDRNEYQGVGLLNFNDKENDDWKQLLPDAEHIVLHLDHVLNNITWESLYPEWIDEEEEFEVPSCPSLPRLPVPGKPRIDLIAVKLPCNKSGDWARDVARLHLQLAAARLAATAKSYHPVRVLLVTECFPIPNLFTCKELVAREGNIWLYEPNLNTMRGKLQLPVGSCELSVPLQAKVDRFYSASAHREAYATILHSAHVYVCGAIAAAQSIRMAGSTRDLVILVDKTISEYHRGGLEAAGWKIHTIERIRNPKAERDAYNEWNYSKFRLWQLTDYDKIIFIDADLLILRNIDFLFEMPEISAIGNNATLFNSGVMVIEPSNCTFQLLMDHINEIESYNGGDQGYLNEIFTWWHRIPKHMNFLKHFWEGDEEEKKEMKTRLFGADPPVLYVLHYLGLKPWLCFRDYDCNWNVDILQEFASNVAHKRWWKIHDAMPENLQKFCLLRSKQKAALEWDRRQAEKGNYTDGHWKIKIKDPRLQTCFEDFCFWESMLWHWGETNWTDNATATLPPPTTTTASLPSL* 644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1353 643 Pfam Glycosyl transferase family 8 317 523 IPR002495 GO:0016757
Vvi18g1353 643 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 308 559 IPR029044 -
Vvi18g1353 643 FunFam Hexosyltransferase 308 560 - -
Vvi18g1353 643 CDD GT8_Glycogenin 311 556 - -
Vvi18g1353 643 SUPERFAMILY Nucleotide-diphospho-sugar transferases 311 561 IPR029044 -
Vvi18g1353 643 PANTHER GLYCOGENIN SUBFAMILY MEMBER 218 603 - -
Vvi18g1353 643 MobiDBLite consensus disorder prediction 1 41 - -
Vvi18g1353 643 MobiDBLite consensus disorder prediction 17 41 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1353 Vvi-Chr18 13701215 13706216 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1353 4 643 Glycosyltransferase AT1G77130 69.147 0.0 897
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1353 K20890 - vvi:100245489 1301.96