Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1348 ATGGCCATTGAGAGCTCGGCAACCGACCGACGTCACCGATTTAATCACTCAGGGACTCGACTGAGTCATGAGTCAATGCGTCACGGTAGAGCTCCGTTCACAACACTACACAGATCCAATTCCCTCTCCTTCCATCACCAATCCAACTTTTCAACAATTCAGCGCCAAGTGAATCAAACTTCAGAGCACAAAATATTTACTCATCTTTTGAAAATTTGCCTACAACAATGCCAGCGAATCAAAATCCGCCACCCGTTCGACGAAACGCCTCAAAGGCTAGCCCAAGCTTCAAGAACCAGCAAAACTATCCACGCCCAGACCCTGAAATTTGGGTTTGGATCAAAAGGGCGGCTGGGTAGTGCCATTGTTGATTTGTATGCTAAATGTGGCAATGTGGAATTTGCTGCGAAGGCATTTAACCAGCTTGAGAAACGAGATATACTGGCATGGAACTCGGTTCTTTCCATGTATTCGAGGCAGGGATCGTTGGAGCAGGTTATTTGGTGTTTTGGGTCATTGCAGAATTGTGGCGTGTCGCCCAATCAGTTCACTTATGCTATTGTTTTGTCCTCTTGTGCAAGATTGGTGGATATTGATCTGGGCAAACAAGTCCATTGTGGTGTTATTAAGATGGGTTTTGAGTTTAATTCCTTTTGTGAAGGGTCTTTAATTGATATGTATTCAAAATGTGGTTCTCTGGTTGATGCTCGGAAAATATTTGATGCAGTGGTGGATCCTGATACAGTTTCCTGGACAGCAATGATTGCAGGGTATGTTCAAGTTGGTTTACCTGAGGAGGCACTTAAGGTGTTTGAGGATATGCAGAAACTAGGCCTTGTTCCAGACCAGGTTGCATTTGTGACTGTCATAACTGCATGTGTTGGTTTGGGAAGGCTTGATGATGCATGTGATTTATTTGTCCAAATGCCCAACACAAATGTTGTAGCATGGAATGTGATGATTTCTGGGCATGTGAAGAGAGGTTGTGATATAGAAGCTATTGATTTTTTCAAAAACATGTGGAAAACTGGTGTTAAGTCGACGCGATCCACATTAGGAAGTGTGTTGAGTGCCATTGCTAGTTTAGAAGCTCTCAACTATGGCCTGCTGGTTCATGCTCAGGCAATCAAACAGGGTTTAAATTCTAATGTTTATGTTGGAAGTTCTTTGATCAATATGTATGCCAAGTGTGAGAAAATGGAAGCTGCCAAGAAAGTTTTTGATGCTTTGGATGAGAGAAATCTTGTGCTATGGAATGCAATGCTAGGAGGTTATGCACAGAATGGGTATGCCAGTAAAGTCATGAAGTTATTCTCTGAAATGAGGGGTTGTGGTTTCTGGCCTGATGAATTTACCTACACTAGCATTCTGAGTGCATGTGCCTGCTTGGAATGTTTAGAAATGGGGCGCCAGTTGCATTCATTTATTATCAAACATAATTTTGAATACAACTTATTTGTGGAAAACACATTAGTAGATATGTATGCTAAATGTGGGGCTCTAGAGGAAGCAAGACAACAATTTGAATTCATAAGGAATAGAGACAATGTTTCTTGGAATGCAATTATTGTTGGGTATGTGCAGGAAGAAGACGAGGATGAGGCTTTCAACATGTTTCGAAGGATGATCTTGGATGGGATTGCACCTGATGAAGTGTCTTTGGCTAGTATACTTAGTGGATGTGCAAATCTTCAAGCTCTTGAACAAGGAGAGCAGGTGCATTGCTTTTTGGTCAAATCTGGTTTACAAACTTGCCTTTATGCAGGAAGCTCCCTTATTGACATGTATGTCAAATGTGGTGCCATTGAAGCCGCTCGATATGTTTTCTCTTGCATGCCTAGCCGAAGTGTTGTCTCCATGAATGCTATTATTGCAGGGTATGCTCAAAATGATCTAGTTGAAGCAATAGATCTGTTCCAAGAGATGCAGAACGAGGGATTGAACCCATCTGAAATCACCTTTGCAAGCCTTTTGGATGCATGTACTGGACCTTATAAATTGAATCTGGGAAGGCAAATCCACTGTCTAATACAAAAGAGGGGCCTTTTGTATGATGGTGATTTCTTAGGCGTCTCTCTCTTGGTCATGTATATGAACTCCCAAAGGAAAACAGATGCAGATATTCTTTTCTCAGAGTTTCAATATCCAAAGAGTACAATCTTATGGACAGCAATAATATCAGGACACACTCAAAATGGTTGCAGCGAGGAGGCTTTGCAGTTGTATCAAGAAATGCATAGAAACAATGCCAGACCGGACCAAGCCACATTTGCTAGTGTCCTTAGAGCATGTTCCATCTTAGCTTCTTTGGGAGATGGTAGAATGATCCATTCTCTCATTTTCCATGTTGGTTTGGACTCAGACGAGTTAACAGGCAGCGCCGTTGTAGACATGTATGCTAAATGTGGGGATATGAAAAGTTCTGTTCAAGTTTTTGAAGAAATGGGTAGTAAAAATGATGTTATCTCTTGGAACTCGATGATAGTTGGATTTGCTAAAAATGGGTATGCAGAAAATGCACTGAAAATCTTTGATGAGATGAAGCACACACGAATAAGGCCTGATGATGTTACATTCCTTGGTGTTCTCACTGCATGTAGTCATGCAGGCAGGGTATCTGAAGGCCGTGAAATCTTTGACATCATGGTCCATTCCTATAAGATTGTGCCAAGATTAGATCATTGCGCTTGTATGATTGATCTTCTGGGCAGATGGGGCTTTCTCAAAGAAGCTGAGGAGTTCATTGACAAGCTAAATTTTGAGCCCAATGCTATGATTTGGGCAACACTACTTGGTGCTTGCAGAATACATGGAGATGATATAAGGGGGCGACGAGCAGCTGAGAAGCTGATTGAATTGGAACCTGAAAATTCTTCTCCTTATGTGCTACTTTCTAATATATATGCTGCATCAGGAAACTGGGATGAGGTTAACTCAGTGAGGAGGGCAATGAGAGAAAAAGGACTGAGAAAGTTGCCTGGATGTAGCTGGATAGTAGTAGGACAGAAGACAAACTTATTTGTAGCAGGGGATAAATTTCATCCCAGTGCTGGTGAAATCCATGCACTTTTGAAGGATTTGATAGCACTAATGAAAGAAGATGGTTATATTGCTGAAACTGATTCTCTGTTGGAAGATGAAGACTGA 3147 0.4166 MAIESSATDRRHRFNHSGTRLSHESMRHGRAPFTTLHRSNSLSFHHQSNFSTIQRQVNQTSEHKIFTHLLKICLQQCQRIKIRHPFDETPQRLAQASRTSKTIHAQTLKFGFGSKGRLGSAIVDLYAKCGNVEFAAKAFNQLEKRDILAWNSVLSMYSRQGSLEQVIWCFGSLQNCGVSPNQFTYAIVLSSCARLVDIDLGKQVHCGVIKMGFEFNSFCEGSLIDMYSKCGSLVDARKIFDAVVDPDTVSWTAMIAGYVQVGLPEEALKVFEDMQKLGLVPDQVAFVTVITACVGLGRLDDACDLFVQMPNTNVVAWNVMISGHVKRGCDIEAIDFFKNMWKTGVKSTRSTLGSVLSAIASLEALNYGLLVHAQAIKQGLNSNVYVGSSLINMYAKCEKMEAAKKVFDALDERNLVLWNAMLGGYAQNGYASKVMKLFSEMRGCGFWPDEFTYTSILSACACLECLEMGRQLHSFIIKHNFEYNLFVENTLVDMYAKCGALEEARQQFEFIRNRDNVSWNAIIVGYVQEEDEDEAFNMFRRMILDGIAPDEVSLASILSGCANLQALEQGEQVHCFLVKSGLQTCLYAGSSLIDMYVKCGAIEAARYVFSCMPSRSVVSMNAIIAGYAQNDLVEAIDLFQEMQNEGLNPSEITFASLLDACTGPYKLNLGRQIHCLIQKRGLLYDGDFLGVSLLVMYMNSQRKTDADILFSEFQYPKSTILWTAIISGHTQNGCSEEALQLYQEMHRNNARPDQATFASVLRACSILASLGDGRMIHSLIFHVGLDSDELTGSAVVDMYAKCGDMKSSVQVFEEMGSKNDVISWNSMIVGFAKNGYAENALKIFDEMKHTRIRPDDVTFLGVLTACSHAGRVSEGREIFDIMVHSYKIVPRLDHCACMIDLLGRWGFLKEAEEFIDKLNFEPNAMIWATLLGACRIHGDDIRGRRAAEKLIELEPENSSPYVLLSNIYAASGNWDEVNSVRRAMREKGLRKLPGCSWIVVGQKTNLFVAGDKFHPSAGEIHALLKDLIALMKEDGYIAETDSLLEDED* 1049
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1348 1048 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 957 991 IPR002885 -
Vvi18g1348 1048 FunFam Pentatricopeptide (PPR) repeat-containing protein 884 1046 - -
Vvi18g1348 1048 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 616 649 IPR002885 -
Vvi18g1348 1048 Pfam PPR repeat 222 241 IPR002885 -
Vvi18g1348 1048 Pfam PPR repeat 315 344 IPR002885 -
Vvi18g1348 1048 Pfam PPR repeat 489 510 IPR002885 -
Vvi18g1348 1048 Pfam PPR repeat 794 818 IPR002885 -
Vvi18g1348 1048 Pfam PPR repeat 897 917 IPR002885 -
Vvi18g1348 1048 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 247 281 IPR002885 -
Vvi18g1348 1048 Gene3D Tetratricopeptide repeat domain 837 1009 IPR011990 GO:0005515
Vvi18g1348 1048 MobiDBLite consensus disorder prediction 1 27 - -
Vvi18g1348 1048 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 718 752 IPR002885 -
Vvi18g1348 1048 FunFam Pentatricopeptide repeat-containing protein chloroplastic 569 668 - -
Vvi18g1348 1048 FunFam Pentatricopeptide repeat-containing protein chloroplastic 467 568 - -
Vvi18g1348 1048 NCBIfam pentatricopeptide repeat 249 282 IPR002885 -
Vvi18g1348 1048 NCBIfam pentatricopeptide repeat 416 449 IPR002885 -
Vvi18g1348 1048 NCBIfam pentatricopeptide repeat 315 346 IPR002885 -
Vvi18g1348 1048 NCBIfam pentatricopeptide repeat 721 753 IPR002885 -
Vvi18g1348 1048 NCBIfam pentatricopeptide repeat 517 551 IPR002885 -
Vvi18g1348 1048 NCBIfam pentatricopeptide repeat 822 855 IPR002885 -
Vvi18g1348 1048 FunFam Pentatricopeptide repeat-containing protein, mitochondrial 319 464 - -
Vvi18g1348 1048 Gene3D Tetratricopeptide repeat domain 47 195 IPR011990 GO:0005515
Vvi18g1348 1048 Gene3D Tetratricopeptide repeat domain 292 364 IPR011990 GO:0005515
Vvi18g1348 1048 Gene3D Tetratricopeptide repeat domain 365 464 IPR011990 GO:0005515
Vvi18g1348 1048 Gene3D Tetratricopeptide repeat domain 196 291 IPR011990 GO:0005515
Vvi18g1348 1048 Gene3D Tetratricopeptide repeat domain 677 770 IPR011990 GO:0005515
Vvi18g1348 1048 Gene3D Tetratricopeptide repeat domain 465 570 IPR011990 GO:0005515
Vvi18g1348 1048 Gene3D Tetratricopeptide repeat domain 571 668 IPR011990 GO:0005515
Vvi18g1348 1048 FunFam Pentatricopeptide repeat-containing protein At3g09040, mitochondrial 62 225 - -
Vvi18g1348 1048 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 515 549 IPR002885 -
Vvi18g1348 1048 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 313 347 IPR002885 -
Vvi18g1348 1048 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 414 448 IPR002885 -
Vvi18g1348 1048 Pfam PPR repeat family 718 764 IPR002885 -
Vvi18g1348 1048 Pfam PPR repeat family 616 661 IPR002885 -
Vvi18g1348 1048 Pfam PPR repeat family 820 867 IPR002885 -
Vvi18g1348 1048 Pfam PPR repeat family 515 563 IPR002885 -
Vvi18g1348 1048 Pfam PPR repeat family 246 293 IPR002885 -
Vvi18g1348 1048 Pfam PPR repeat family 146 194 IPR002885 -
Vvi18g1348 1048 Pfam PPR repeat family 414 461 IPR002885 -
Vvi18g1348 1048 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 146 180 IPR002885 -
Vvi18g1348 1048 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 553 1044 IPR046960 GO:0003723|GO:0009451
Vvi18g1348 1048 Pfam E motif 941 998 IPR046848 -
Vvi18g1348 1048 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 820 854 IPR002885 -
Vvi18g1348 1048 FunFam Pentatricopeptide repeat-containing protein, mitochondrial 677 769 - -
Vvi18g1348 1048 FunFam Pentatricopeptide repeat-containing protein mitochondrial 771 883 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1348 Vvi-Chr18 13662478 13665624 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1348 161 662 Glycoside Hydrolase AT3G49170 33.151 2.56e-83 287
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1348 - - vvi:100257512 2111.65