Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1346 ATGACTTCTTCCCAGATCAATTACTACAACTTCCCACCTTTTTCTCCTCCTCCACCACCTCCTCATAGACGTCCACCACCTCCACCTCCTCATATAAACCCACCACCACCGCCTCCTCATACACGCCCACCACCACCACCTCATACACGCCCACCACCTCCACCTCATGTACTTCCACCACCACCTTCACCATCACCAGACAGCCATCCCACAGTCATAATCATTGTGTTCGTCTCATTGGGTGGTCTATTCTTCCTTGCATTCCTCTCAGTTGCTCTCTGTTGCTTCCTCAAAAAGAGGAAGAAGAAGATGGTTCAGGAGACAGATATCATAAAGGTCGACGAGCATTTGACAGTGAAAGAGGCCATTGTCCCAGGCCCACATGGAGAGCAGGCTGTGGTGCTGTTTGTGGATGATGATGTGCATATCCAAGAAGAGATCAGAAAGAACGAGAAGTTTGGCCAAGGTCATTTGCATGGTAAGTCTGCCCAAGGCATCACTAGCGCAATTGGAAAGAAAAAGAATATGGTTCAAGAAACAGAAATGGTAAATGTCGATGAACATTTGAAGGTGAAGGAGGCGATGCTGGCAGGACCACATGGAGCACAAGCTCTGGCACTATGCATGGAAGATGATAAGCATATCCATGAAGAGATTCAAAAAAATGAGAAGCTTGGTGAAGGTTTGCATGGTAAGGCTGCCAAAGGCATTACTGGTGCAATTGGGAAGGGAAAGAAGATGGTTCAAGAAACAGAAATAATAGATGTGGATGAACATTCGAAGGTGAAGGAGGGAGTTATAGCAGGCCCACATGGAGAACAAGTTGTGTTACTAACCGAAGAGGATGATGTGCATATTCAAGAAGAGATTAGAAAGAATGAGAAGATTGGTGAAGGTTTGCATGGCAAGTCTGCACAAGGCATTACCGGTGCAATTGAAAAGGGGGGATACTCATCCATTTCCAATCATCGTCTTGGACACAAGGCTTGA 990 0.4626 MTSSQINYYNFPPFSPPPPPPHRRPPPPPPHINPPPPPPHTRPPPPPHTRPPPPPHVLPPPPSPSPDSHPTVIIIVFVSLGGLFFLAFLSVALCCFLKKRKKKMVQETDIIKVDEHLTVKEAIVPGPHGEQAVVLFVDDDVHIQEEIRKNEKFGQGHLHGKSAQGITSAIGKKKNMVQETEMVNVDEHLKVKEAMLAGPHGAQALALCMEDDKHIHEEIQKNEKLGEGLHGKAAKGITGAIGKGKKMVQETEIIDVDEHSKVKEGVIAGPHGEQVVLLTEEDDVHIQEEIRKNEKIGEGLHGKSAQGITGAIEKGGYSSISNHRLGHKA* 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1346 329 PRINTS Proline rich extensin signature 34 55 - -
Vvi18g1346 329 PRINTS Proline rich extensin signature 18 30 - -
Vvi18g1346 329 PRINTS Proline rich extensin signature 55 71 - -
Vvi18g1346 329 MobiDBLite consensus disorder prediction 11 65 - -
Vvi18g1346 329 MobiDBLite consensus disorder prediction 1 65 - -
Vvi18g1346 329 PANTHER OS08G0108300 PROTEIN 243 328 IPR044950 GO:0009834
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1346 Vvi-Chr18 13646454 13647443 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1346 - - vvi:100247264 506.908