Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1345 ATGACTTCTTCCCAGATCAATTACTACAACTTCCCACCTTTTTCTCCTCCTCCACCACCTCCTCATAGACGTCCACCACCTCCACCTCCTCATATAAATCCACCACCGCCTCCTCATACACGCCCACCACCACCACCTCATACACGCCCACCACCTCCACCTCCTCATATAAATCCACCACCGCCTCCTCATACACGCCCACCACCACCACCTCATAGACGTCCACCACCTCCACCTCCTCATATAAATCCACCACCGCCTCCTCATACACGCCCACCACCACCACCTCATACACGCCCACCACCTCCACCTCATGTACTTCCACCACCACCTTCACCATCACCAGACAGCCATCCCACAGTCATAATCATTGTGTTCGTCTCATTGGGTGGTCTATTCTTCCTTGCATTCCTCTCAGTTGCTCTCTGTTGCTTCCTCAAAAAGAGGAAGAAGAAGATGGTTCAGGAGACAGATATCATAAAGGTCGACGAGCATTTGACAGTGAAAGAGGCCATTGTCCCAGGCCCACATGGAGAGCAGGCTGTGGTGCTGTTTGTGGATGATGATGTGCATATCCAAGAAGAGATCAGAAAGAACGAGAAGTTTGGCCAAGGTCATTTGCATGGTAAGTCTGCCCAAGGCATCACTAGCGCAATTGGAAAGAAAAAGAATATGGTTCAAGAAACAGAAATGGTAAATGTCGATGAACATTTGAAGGTGAAGGAGGCGATGCTGGCAGGACCACATGGAGCACAAGCTCTGGCACTATGCATGGAAGATGATAAGCATATCCATGAAGAGATTAAAAAAAATGAGAAGCTTGGTGAAGGTTTGCATGGTAAGGCTGCCAAAGGCATTACTGGTGCAATTGGGAAGGGAAAGAAGATGGTTCAAGAAACAGAAATAATAGATGTGGATGAACATTCGAAGGTGAAGGAGGCGATGCTGGCTCCACATGGAGCACAAGCTCTGGCACTATGCATGGAAGATGATAAGCATATCCATGAAGAGATTCAAAAAAATGAGAAGCTTGGTGAAGGTTTGCATGGTAAGGCTGCCAAAGGCATTACTGGTGCAATTGGGAAGGGAAAGAAGATGGTTCAAGAAACAGAAATAATAGATGTGGATGAACATTCGAAGGTGAAGGAGGCGATGCTGGCTCCACATGGAGCACAAGCTCTGGCACTATGCATGGAAGATGATAAGCATATCCATGAAGAGATTCAAAAAAATGAGAAGCTTGGTGAAGGTTTGCATGGTAAGGCTGCCAAAGGCATTACTGGTGCAATTGGGAAGGGAAATAAGATGGTTCAAGAAACAGAAATAATAGATGTGGATGAACATTCGAAGGCGAAGGAGGGAGTTATAGCAGGCCCACATGGAGAACAAGTTGTGTTACTAACCGAAGAGGATGATGTGCATATTCAAGAAGAGATTAGAAAGAATGAGAAGATTGGTGAAGGTTTACATGGCAAGTCTGCACAAGGCATTACCGGTGCAATTGAGAAGGGGGGATACTCATCCATTTCCAATCATCGTCTTGGACACAAGGCTTGA 1557 0.4656 MTSSQINYYNFPPFSPPPPPPHRRPPPPPPHINPPPPPHTRPPPPPHTRPPPPPPHINPPPPPHTRPPPPPHRRPPPPPPHINPPPPPHTRPPPPPHTRPPPPPHVLPPPPSPSPDSHPTVIIIVFVSLGGLFFLAFLSVALCCFLKKRKKKMVQETDIIKVDEHLTVKEAIVPGPHGEQAVVLFVDDDVHIQEEIRKNEKFGQGHLHGKSAQGITSAIGKKKNMVQETEMVNVDEHLKVKEAMLAGPHGAQALALCMEDDKHIHEEIKKNEKLGEGLHGKAAKGITGAIGKGKKMVQETEIIDVDEHSKVKEAMLAPHGAQALALCMEDDKHIHEEIQKNEKLGEGLHGKAAKGITGAIGKGKKMVQETEIIDVDEHSKVKEAMLAPHGAQALALCMEDDKHIHEEIQKNEKLGEGLHGKAAKGITGAIGKGNKMVQETEIIDVDEHSKAKEGVIAGPHGEQVVLLTEEDDVHIQEEIRKNEKIGEGLHGKSAQGITGAIEKGGYSSISNHRLGHKA* 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1345 518 PRINTS Proline rich extensin signature 16 37 - -
Vvi18g1345 518 PRINTS Proline rich extensin signature 58 75 - -
Vvi18g1345 518 PRINTS Proline rich extensin signature 38 54 - -
Vvi18g1345 518 PANTHER OS08G0108300 PROTEIN 433 517 IPR044950 GO:0009834
Vvi18g1345 518 MobiDBLite consensus disorder prediction 11 115 - -
Vvi18g1345 518 MobiDBLite consensus disorder prediction 1 115 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1345 Vvi-Chr18 13621107 13622663 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1345 - - vvi:100259240 555.444