Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1344 ATGGAAGCTCTAATTGCCGTCCCCAAACAACGCTTTCCCTGCACTCCACGTGGGCGGAATCTCACTCGCCCCCTCCGACCTCCCAGGCCCTCTCTCACATTCCGGCAACAAACCTTCTCAGCCGTGGCAGCTCCGGCGCGCCAACAGGTCACGCACTCAATGCCACCGGAAAAGGTGGAAGTGTTCAAGTCACTGGAAGGGTGGGCCTCCGAGTGGGTCCTACCGCTTCTGAAGCCCGTGGAGCAGTTGTGGCAGCCGCAGGACTTCCTGCCGGACCCCGCGCAGCCGTTCGACGCGTTTTCTGAGCAGGTGAGGGAGCTACGTGATCGGACGGCGGAGCTTCCGGACGAGTACTTCGTGGTGCTAGTGGGAGATATGATAACGGAGGACGCCTTGCCGACGTATCAGACGATGATCAATACGCTTGATGGGGTGAGAGATGAGACGGGCGCGAGTGCGAGCCCCTGGGCCAAGTGGACCCGGTCATGGACGGCGGAGGAGAATCGCCACGGGGATCTGTTGAGAACCTATCTCTATCTTTCTGGTCGGGTTGATATGCGTATGATTGAGAGGACGGTGCAGTACCTGATCAGCGCCGGAATGGATCCGGGAACAGAAAACAACCCATACTTGGGATTCGTCTACACGTCCTTCCAAGAGCGAGCCACTTTCGTATCTCACGGCAACACCGCACGCCTGGCCAAGGACGGCGGCGATCCAGTCCTCGCCCGGATCTGCGGCAGCATCGCCGCCGACGAGAGGCGCCACGAGAACGCCTACTCCAGAATCGTCGAGAAGCTCCTAGAAGTGGATCCCACTGGCGCCATGCTCGCCATCGCCGACATGATGCGCAAGAAGATCACCATGCCCGCCCACCTAATGTACGACGGCTGTGACCCCCGCCTCTTCGAACATTTCTCCGCCGTGGCTCAGCGCCTCGGGGTCTACACGGCCGACGACTACGCTGATATACTGGAGTTCCTGATCGGACGGTGGAAGCTGGAGAAGCTGGAGGGCTTGACGGGGGAGGGAAGGCGTGCGCAGGACTTCGTGTGTGGGTTAGCGCCCAGGATCAGAAAGCTGCAGGAGCGAGCCGATGAGCGAGCCAGGAAGATGGGTCCGCAAGGCGCCAGGTTCAGCTGGATCTTCAATAAAGAGGTGGCTTTGTAG 1170 0.6026 MEALIAVPKQRFPCTPRGRNLTRPLRPPRPSLTFRQQTFSAVAAPARQQVTHSMPPEKVEVFKSLEGWASEWVLPLLKPVEQLWQPQDFLPDPAQPFDAFSEQVRELRDRTAELPDEYFVVLVGDMITEDALPTYQTMINTLDGVRDETGASASPWAKWTRSWTAEENRHGDLLRTYLYLSGRVDMRMIERTVQYLISAGMDPGTENNPYLGFVYTSFQERATFVSHGNTARLAKDGGDPVLARICGSIAADERRHENAYSRIVEKLLEVDPTGAMLAIADMMRKKITMPAHLMYDGCDPRLFEHFSAVAQRLGVYTADDYADILEFLIGRWKLEKLEGLTGEGRRAQDFVCGLAPRIRKLQERADERARKMGPQGARFSWIFNKEVAL* 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1344 389 PANTHER ACYL- ACYL-CARRIER-PROTEIN DESATURASE-RELATED 43 387 IPR005067 GO:0006631|GO:0045300
Vvi18g1344 389 SUPERFAMILY Ferritin-like 47 387 IPR009078 -
Vvi18g1344 389 Gene3D Ribonucleotide Reductase, subunit A 42 389 IPR012348 GO:0016491
Vvi18g1344 389 Pfam Fatty acid desaturase 57 383 IPR005067 GO:0006631|GO:0045300
Vvi18g1344 389 CDD Acyl_ACP_Desat 57 365 IPR005067 GO:0006631|GO:0045300
Vvi18g1344 389 ProSitePatterns Fatty acid desaturases family 2 signature. 307 326 IPR005803 GO:0006633|GO:0016491
Vvi18g1344 389 FunFam Stearoyl-[acyl-carrier-protein] 9-desaturase, chloroplastic 41 389 - -
Vvi18g1344 389 PIRSF Dlt9_acylACP_des 18 389 IPR005067 GO:0006631|GO:0045300
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1344 Vvi-Chr18 13616658 13618126 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1344 39 389 Acyl Lipid Metabolism Gene Families AT1G43800 79.832 0.0 597
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1344 K03921 - vvi:100255873 768.459