Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1341 ATGATCAGTGCAGATGATTTCTACAAGGTCATGTGTGCAATGGTTCCATTGTATTTTGCAATGCTGGTTGCATATGGGTCAGTGAAATGGTGCAAGATATTCTCGCCGGAGCAGTGCTCCGGCATTAACCGGTTCGTTGCGGTGTTTGCCGTTCCGGTTCTTTCCTTCCACTTCATATCTCAGAACAACCCATATGAGATGGACACCAAGTTTATAGTTGCAGACACTCTCTCTAAGTTGCTGGTTCTTGTGTTGCTGTCCGTGTGGGCTATCTTGTTTAAGGGAGGGTTGGACTGGCTCATCACTCTCTTCTCTCTCGCCACTTTGCCAAACACTCTGGTCATGGGCATCCCTTTGCTCAATGCCATGTATGGAGACTTCACTCAGAGCCTCATGGTGCAACTGGTTGTTCTTCAGTGCATTATCTGGTACACTCTACTGCTCTTCCTGTTTGAATACAGAGCTGCCACTCTACTGATCAAGAACCAGTTCCCTGGCTCCACTGCCGCTTCCATATCGAAATTTGAGATAGACGGAGACGTCATATCGCTAGATGGCCGTGACCCAGTACGCACCGAATCTGAAATCGATGGCAATGGTCGTATCCGCGTGCGTATCAGACGGTCCACATCTTCCGCTCCGGACTCGGCCTTATCATCGTCCATGGGCATCACTCCCAGGGCGTCCAATCTCTCCGGAGCCGAAATTTTCTCCGTCAACACTCCCGCGCCGCTGCATGAGTACCACAACGGAAACGCCGATATTGCATTCGGAAATGGAGATTTGGGATTCGGGTATCGGTCGGCGAGTCCTCGACTATCCGGGTACGCCTCGTCCGACGCTTATTCGCTTCAACCGACGCCACGCGCCTCCAATTTCAATGAATTGGACACCACTACAATAACAACGACGAACACGCCATTCTGGGTGAGATCCCCGGTGGCAGGGAAGGTTTACCGGCAACAGTCGCCGGCTTTTTCAGGGGTGAGAATGGTGTGGGAGTCGCCGGGAAAGTGCAACGGTGGTGGAGGAGAGAGACAAGGGTGCAAAGATGTCGTCGGAGAAAGAGAGATTAGTTTCAGGGACAGCTCCAAATTTCCAGTGGCGGAGGAAGAAGACCCAAAAGCGACAGCGACCGGTCAAGATATGCCACGCACCCATGTGATGCTGAGGCTCATACTGACCATGGTCGGCCGGAAGCTCTCACGTAATCCCAATACCTACTCAAGTGTCCTAGGCCTTCTGTGGTCTCTAATCTCCTTCAAATGGAATGTGGGGATGCCGAGTTTGGTGAAGTATTCAATAAAAATAATTTCAGATGCTGGTCTAGGGATGGCCATGTTCAGTTTAGGGCTGTTCATGGCTCTTCAGCCCCGGATAATTGCCTGTGGAACAAAGAGGGCAACCATGGGAATGGGGATCCGCTTCATTTGCGGGCCTATATTAATGTCAGCTGCGTCCATAGCTGTTGGACTAAGAGGAGTTCGACTTCACGCAGCCATAGTACAGGCAGCTCTTCCTCAAGGGATTGTACCATTTGTCTTCGCTAGAGAATACGGTTTGCATCCTGATATTCTGAGTACCGGGGTTATATTTGGCATGTTAGTGTCCTTACCAGTAACGCTCCTCTACTACATATTATTAGGCCTATGA 1653 0.5045 MISADDFYKVMCAMVPLYFAMLVAYGSVKWCKIFSPEQCSGINRFVAVFAVPVLSFHFISQNNPYEMDTKFIVADTLSKLLVLVLLSVWAILFKGGLDWLITLFSLATLPNTLVMGIPLLNAMYGDFTQSLMVQLVVLQCIIWYTLLLFLFEYRAATLLIKNQFPGSTAASISKFEIDGDVISLDGRDPVRTESEIDGNGRIRVRIRRSTSSAPDSALSSSMGITPRASNLSGAEIFSVNTPAPLHEYHNGNADIAFGNGDLGFGYRSASPRLSGYASSDAYSLQPTPRASNFNELDTTTITTTNTPFWVRSPVAGKVYRQQSPAFSGVRMVWESPGKCNGGGGERQGCKDVVGEREISFRDSSKFPVAEEEDPKATATGQDMPRTHVMLRLILTMVGRKLSRNPNTYSSVLGLLWSLISFKWNVGMPSLVKYSIKIISDAGLGMAMFSLGLFMALQPRIIACGTKRATMGMGIRFICGPILMSAASIAVGLRGVRLHAAIVQAALPQGIVPFVFAREYGLHPDILSTGVIFGMLVSLPVTLLYYILLGL* 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1341 550 PANTHER AUXIN EFFLUX CARRIER COMPONENT 1B-RELATED 1 550 - -
Vvi18g1341 550 NCBIfam auxin efflux carrier 1 550 IPR014024 -
Vvi18g1341 550 Pfam Membrane transport protein 10 545 IPR004776 GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1341 Vvi-Chr18 13551373 13554243 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1341 1 528 Organic Solute Cotransporters AT1G77110 67.730 0.0 746
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1341 K13947 - vvi:100250503 1060.06