Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1339 ATGCCTCGCCGGAGACACGACGACGACGACGATGATCTGGAGCCCGAGGAAGATGATGTTCTCGACGACGACGAAGATTACGAGGACGAGGACGTCGGAGTCGGTTCAAGTCGCAAGAGGTCGAGATCTGAGTTTATAGATGATGTTGCCGAGGAGGACGACGACGAGGATGACGACGACGACGATGAAGATTTTGGAGGTAGTCGTCGCGGCAGCCACCGGGCCAAGAGGCGGTCTGGCTCCGAGTTTCTGGACCTTGAAGCTGCGGTCGACAGTGATGAGGAAGAGGAGGAGGAAGACGGCGAGGATGATTTCATTGTTGATGCTGGAGCTGAATTACCCGATGAAGATGATGGTCAGAGGATGCGTCGTCGCCCCTTGCTACCACAAGAAGACGAGCAAGAAGATTTTGAGGCTCTAGAGAGAAAGATTCAGGAAAGATATGGTAAGTCAAGTCATGCAGAATATGATGAGGAGACCACGGAGGTAGAACAGCAAGCTCTTTTGCCATCTGTTAGGGATCCTAAGTTGTGGATGGTGAAATGTGCGATTGGTCATGAGCGAGAGGCAGCTGTTTGCCTAATGCAGAAATCCATCGATAAAGGACCTGAGGTGCAGATCAGGTCTGCTATTGCCCTAGATCATCTAAAAAACTATATATATATTGAAGCTGACAAAGAAGCTCATGTGAAGGAGGCATGCAAAGGTCTACGCAACATATATGCCCAGAAAGTAATGCTTGTTCCGATTAGAGAAATGACTGATGTACTTTCTGTTGAAAGCAAAGCAGTTGATCTTTCTAGGAATACTTGGGTCAGAATGAAGATTGGGACATATAAAGGAGATCTGGCAAAAGTAGTTGATGTGGACAATGTGCGACAGAGAGTTACTGTGCAACTAATTCCAAGAATTGACTTGCAAGCTCTTGCAAATAAGCTGGAAGGTAGAGAAGTTGTGACAAAGAAGGCCTTTAAACCTCCTCCACGTTTTATGAATGTTGAGGAAGCTAGAGAAATGCATATCCGTGTAGAGCGTAGGCGGGATCCGATGACTGGTGATTATTTCGAGAATATAGGTGGTATGATGTTCAAGGATGGTTTCTTGTATAAAACAGTGTCCATGAAATCAATTAGTGTTCAGAACATACAGCCCACATTTGATGAACTTGAGAAATTTCGAACACCTGGCGAGACTGAAGATGGTGATATGGCTAGTTTGTCAACTTTGTTTGCAAATAGAAAGAAAGGTCACTTCATGAAAGGTGATGCAGTTATTATAGTGAAGGGAGATCTAAAAAATTTGAAGGGATGGGTTGAGAAGGTTGAGGAAGAGAATGTTCACATCAGACCAGAAATGAAGGGTCTTCCAAAAACTCTTGCTGTAAATGAAAAAGAGCTATGCAAGTACTTTGAACCAGGGAATCATGTGAAGGTTGTCTCTGGCACACAGGAAGGTGCGACTGGTATGGTTGTTAAGGTTGAGGGCCATGTGCTCATCATTTTGTCCGATACAACCAAGGAACATCTTCGTGTGTTTGCTGATGATGTTGTGGAGAGCTCAGAGGTAACTTCTGGTGTCACTAGAATTGGGGACTATGAGCTTCATGATCTCGTGCTGCTGGACAATCTGAGCTTCGGTGTAATTATACGTGTTGAAAGTGAAGCTTTCCAGGTTCTAAAGGGAGTTCCAGATAGACCTGAAGTGGTGCTTGTGAAGCTAAGAGAGATAAAATTCAAGATTGATAAGAGGGTAAATGTCCAAGATCGATTTAAGAACACGGTATCTGTAAAAGATGTTGTTAGAATTCTTGACGGACCTTGCAAAGGGAAACAAGGTCCAGTTGAACATATATATAAAGGAGTTCTGTTCATTTATGATCGACATCACCTTGAGCATGCTGGTTTTATTTGCGCTAAATCCCACTCTTGTGTTGTCGTAGGAGGATCACGCAGTAATGCTGACAGAAGTGGTGATTCCTTCTCAAGATTTGCCAATCTCAGAACACCACCTCGCGTTCCTGAGTCACCAAGGAGATTCCCTCGAGGAGGTCGTCCAATGGACTCTGGAGGAAGGCATAGGGGTGGAAGAGGACATGATTCATTGATTGGTAGTACAATAAAAATTCGCCAGGGACCTTTTAAGGGTTACCGTGGGCGTGTTGTTGATGTTAATGGTCAATCTGTTCGGGTTGAATTGGAGTCCCAAATGAAGGTTGTTACAGTTGATCGGAATCAGATTTCTGATAATGTGGCTGTTGCAACCCCATACCGTGATGCACCTCGATATGGTATGGGAAGTGAAACACCCATGCATCCTTCACGAACTCCACTGCATCCATATATGACTCCTATGAGGGATGTTGGAGCTACTCCTATACATGATGGTATGAGAACACCCATGCGGGACCGCGCATGGAATCCTTATGCACCAATGAGTCCTCCAAGGGACAATTGGGAAGAAGGAAATCCTGACTCTTGGGTAACCACCAGTCCACAGTATCAGCCTGGAAGCCCTCCTTCACGAACATATGAAGCACCTACTCCAGGTTCAGGCTGGGCTAGCACTCCTGGTGGCAATTACAGTGAAGCTGGAACACCGAGGGATAGTACCCCTGCTTATGCAAATGTTCCCAGTCCTTACTTGCCTTCAACTCCTGGTGGACAACCTATGACACCAAATTCAGTATCTTACCTACCAGGTACTCCTGGGGGGCAGCCAATGACGCCTGGAACTGGTGTGGATGTTATGTCTCCAATAGGCGGAGAACAAGAAGGGCCATGGTTTATGCCAGACATATTGGTCCACATACGCAGGCCTGGAGAAGAGAACACCCTAGGAGTTATCCGGGAGGTGCTTCCGGATGGTACTTATAGAGTGGGCCTTGGATCCAGTGGTGGGGGTGAAATAGTAACTGTCCTGCATGCTGAAATTGATGCTGTGGCACCAAGAAAATCAGACAAGATCAAGATTATGGGTGGTGCACATCGTGGTGCCACTGGCAAGCTGATTGGTGTTGATGGCACTGATGGAATCGTAAAGGTAGATGATACCCTTGATGTTAAGATATTGGACATGGTTCTCTTGGCAAAACTAGTACAACCATGA 3105 0.4589 MPRRRHDDDDDDLEPEEDDVLDDDEDYEDEDVGVGSSRKRSRSEFIDDVAEEDDDEDDDDDDEDFGGSRRGSHRAKRRSGSEFLDLEAAVDSDEEEEEEDGEDDFIVDAGAELPDEDDGQRMRRRPLLPQEDEQEDFEALERKIQERYGKSSHAEYDEETTEVEQQALLPSVRDPKLWMVKCAIGHEREAAVCLMQKSIDKGPEVQIRSAIALDHLKNYIYIEADKEAHVKEACKGLRNIYAQKVMLVPIREMTDVLSVESKAVDLSRNTWVRMKIGTYKGDLAKVVDVDNVRQRVTVQLIPRIDLQALANKLEGREVVTKKAFKPPPRFMNVEEAREMHIRVERRRDPMTGDYFENIGGMMFKDGFLYKTVSMKSISVQNIQPTFDELEKFRTPGETEDGDMASLSTLFANRKKGHFMKGDAVIIVKGDLKNLKGWVEKVEEENVHIRPEMKGLPKTLAVNEKELCKYFEPGNHVKVVSGTQEGATGMVVKVEGHVLIILSDTTKEHLRVFADDVVESSEVTSGVTRIGDYELHDLVLLDNLSFGVIIRVESEAFQVLKGVPDRPEVVLVKLREIKFKIDKRVNVQDRFKNTVSVKDVVRILDGPCKGKQGPVEHIYKGVLFIYDRHHLEHAGFICAKSHSCVVVGGSRSNADRSGDSFSRFANLRTPPRVPESPRRFPRGGRPMDSGGRHRGGRGHDSLIGSTIKIRQGPFKGYRGRVVDVNGQSVRVELESQMKVVTVDRNQISDNVAVATPYRDAPRYGMGSETPMHPSRTPLHPYMTPMRDVGATPIHDGMRTPMRDRAWNPYAPMSPPRDNWEEGNPDSWVTTSPQYQPGSPPSRTYEAPTPGSGWASTPGGNYSEAGTPRDSTPAYANVPSPYLPSTPGGQPMTPNSVSYLPGTPGGQPMTPGTGVDVMSPIGGEQEGPWFMPDILVHIRRPGEENTLGVIREVLPDGTYRVGLGSSGGGEIVTVLHAEIDAVAPRKSDKIKIMGGAHRGATGKLIGVDGTDGIVKVDDTLDVKILDMVLLAKLVQP* 1035
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1339 1034 MobiDBLite consensus disorder prediction 11 31 - -
Vvi18g1339 1034 Gene3D - 682 749 IPR014722 -
Vvi18g1339 1034 MobiDBLite consensus disorder prediction 32 47 - -
Vvi18g1339 1034 Gene3D - 412 469 IPR014722 -
Vvi18g1339 1034 Gene3D - 472 521 IPR014722 -
Vvi18g1339 1034 FunFam Transcription elongation factor SPT5 156 258 - -
Vvi18g1339 1034 Gene3D - 156 258 IPR036735 GO:0006355
Vvi18g1339 1034 FunFam Transcription elongation factor SPT5 472 521 - -
Vvi18g1339 1034 Pfam Early transcription elongation factor of RNA pol II, NGN section 176 257 IPR005100 -
Vvi18g1339 1034 MobiDBLite consensus disorder prediction 799 911 - -
Vvi18g1339 1034 CDD NGN_Euk 176 258 IPR039385 -
Vvi18g1339 1034 MobiDBLite consensus disorder prediction 822 872 - -
Vvi18g1339 1034 MobiDBLite consensus disorder prediction 87 113 - -
Vvi18g1339 1034 ProSitePatterns Ribosomal protein L24 signature. 421 438 IPR005825 GO:0003735|GO:0005840|GO:0006412
Vvi18g1339 1034 SUPERFAMILY Translation proteins SH3-like domain 673 739 IPR008991 -
Vvi18g1339 1034 CDD KOW_Spt5_3 469 519 IPR041976 -
Vvi18g1339 1034 MobiDBLite consensus disorder prediction 887 901 - -
Vvi18g1339 1034 Pfam KOW motif 472 513 IPR005824 -
Vvi18g1339 1034 Pfam KOW motif 703 733 IPR005824 -
Vvi18g1339 1034 SMART nusgn_4 174 260 IPR006645 GO:0140673
Vvi18g1339 1034 FunFam Transcription elongation factor SPT5 265 307 - -
Vvi18g1339 1034 SUPERFAMILY Translation proteins SH3-like domain 461 520 IPR008991 -
Vvi18g1339 1034 MobiDBLite consensus disorder prediction 1 126 - -
Vvi18g1339 1034 MobiDBLite consensus disorder prediction 758 778 - -
Vvi18g1339 1034 PIRSF Spt5 2 1034 IPR017071 GO:0006357|GO:0032784
Vvi18g1339 1034 MobiDBLite consensus disorder prediction 677 698 - -
Vvi18g1339 1034 FunFam Transcription elongation factor SPT5 686 749 - -
Vvi18g1339 1034 FunFam Transcription elongation factor SPT5 412 469 - -
Vvi18g1339 1034 SMART kow_9 469 496 IPR005824 -
Vvi18g1339 1034 SMART kow_9 981 1008 IPR005824 -
Vvi18g1339 1034 SMART kow_9 699 726 IPR005824 -
Vvi18g1339 1034 SMART kow_9 265 292 IPR005824 -
Vvi18g1339 1034 SMART kow_9 593 620 IPR005824 -
Vvi18g1339 1034 SMART kow_9 417 444 IPR005824 -
Vvi18g1339 1034 CDD KOW_Spt5_6 976 1032 IPR041980 -
Vvi18g1339 1034 CDD KOW_Spt5_4 597 639 IPR041977 -
Vvi18g1339 1034 Pfam Spt5 transcription elongation factor, acidic N-terminal 83 170 IPR022581 -
Vvi18g1339 1034 CDD KOW_Spt5_1 269 306 IPR041973 -
Vvi18g1339 1034 PANTHER SUPPRESSOR OF TY 5 35 1011 IPR039659 GO:0006357|GO:0032784
Vvi18g1339 1034 MobiDBLite consensus disorder prediction 652 702 - -
Vvi18g1339 1034 MobiDBLite consensus disorder prediction 48 64 - -
Vvi18g1339 1034 CDD KOW_Spt5_5 699 747 IPR041978 -
Vvi18g1339 1034 CDD KOW_Spt5_2 418 468 IPR041975 -
Vvi18g1339 1034 Gene3D - 265 307 IPR014722 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1339 Vvi-Chr18 13526224 13535341 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1339 K15172 - vvi:100267652 1968.74