Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1334 ATGATTGGAACTTCGTTGGTTTGTATGTATGCAAAATGTGGGAATGTTGTTGATTCTCGTAAAGTATTTGATTATATGCCTGAGAGGAATGCGGTGACATGGAATGCGATGATATGTGGATACTTGGGGAATGGAGATAGCAAGTCCGCGGTTTTATTATTTGAAAAGATGTCTATACGAACTGCAGTGACATGGATTGAAATGATTGATGGGTTTGCAAGGAGCGGGGATACTGAGACTGCTAGGCGTTTCTTTGATGATGTTCCATCTGAGTTGAGGAATGTAGTAACTTGGACTGTGATGGTTGATGGGTATGCTAGAAATGCGGAGATGGAGGCTGCAAGGGAAGTTTTTGAGGGGATGCCTCAGAGGAATTTCTTTGCTTGGTCATCTATGATTTCTGGGTACTGCAAGAAGGGTAATGTTAAGGAGGCAAGGTCTATTTTTGATCGAATTCCAGTAAGGAATCTGGTGAATTGGAATTCCCTAATTTCTGGGTATGCACAAAATGGGTTTTCTGAGGAAGCTTTGGAAGCATTTGGAAAAATGCAAGCTGAAGGATTTGAGCCAGATGAGGTCACGATAGCCAGTGTTTTATCTGCTTGTTCTCAGTTGGGCCTGTTGGATGCTGGTAAGAAAATCCATCACATGATGAATCATAAGGGCATAAAGCTAAATCAGTTTGTTCTGAATGGACTGGTTGACATGTATGCAAAATGTGGAGATTTAGCTAATGCAAGACTGATCTTTGAAGGGATGGCTCATAGGAACAGGGCCTGTTGGAATTCCATGATCTCAGGTTTTGCCATTCATGGACAAAGTAAGGAGGCTCTTGAGTTTTTCGGCAGAATGGAGGACTCCCATGAGGGGCCAGATGAGATAACTTTCCTCTCAGTGCTCTCAGCATGTGCACACGGGGGGTTTGTGAATGCAGGTTTAGAAATTTTCTCTAGGATGGAAAAATATGGCTTGACAACGGGCATCAAACATTATGGTTGTTTGATTGACCTTTTGGGGCGCGCAGGGAGAATAAAAGAGGCTTATGATTTGATCAAAAGAATGCCAGTGAAACCAAATGATGTAGTTTGGGGTGCCCTTCTTGGAGCTTGCCGGGTTCATTTGGACATGGAGATGGCAGACCGGGTGGTGGAAGAGATTGTTAAAGTGGATTCTAACATTAGCTCTGGATGTGATTCACATTATGTGCTGCTGTCAAATATTTATGCTGCTTCTGATAGATGGGAGAAGGCTGAAAAGATGAGGATGGAAATGGCGAATAAAGGGTTTCAAAAGACATCAGGGTGCAGTTCAATTATGCCAGGCAACAACACCCATGAGTAA 1341 0.4295 MIGTSLVCMYAKCGNVVDSRKVFDYMPERNAVTWNAMICGYLGNGDSKSAVLLFEKMSIRTAVTWIEMIDGFARSGDTETARRFFDDVPSELRNVVTWTVMVDGYARNAEMEAAREVFEGMPQRNFFAWSSMISGYCKKGNVKEARSIFDRIPVRNLVNWNSLISGYAQNGFSEEALEAFGKMQAEGFEPDEVTIASVLSACSQLGLLDAGKKIHHMMNHKGIKLNQFVLNGLVDMYAKCGDLANARLIFEGMAHRNRACWNSMISGFAIHGQSKEALEFFGRMEDSHEGPDEITFLSVLSACAHGGFVNAGLEIFSRMEKYGLTTGIKHYGCLIDLLGRAGRIKEAYDLIKRMPVKPNDVVWGALLGACRVHLDMEMADRVVEEIVKVDSNISSGCDSHYVLLSNIYAASDRWEKAEKMRMEMANKGFQKTSGCSSIMPGNNTHE* 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1334 446 FunFam Pentatricopeptide repeat-containing protein 230 440 - -
Vvi18g1334 446 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 94 128 IPR002885 -
Vvi18g1334 446 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 2 58 IPR046960 GO:0003723|GO:0009451
Vvi18g1334 446 Pfam PPR repeat family 257 304 IPR002885 -
Vvi18g1334 446 Pfam PPR repeat family 156 202 IPR002885 -
Vvi18g1334 446 FunFam Pentatricopeptide repeat-containing protein chloroplastic 102 226 - -
Vvi18g1334 446 Gene3D Tetratricopeptide repeat domain 60 125 IPR011990 GO:0005515
Vvi18g1334 446 Gene3D Tetratricopeptide repeat domain 256 442 IPR011990 GO:0005515
Vvi18g1334 446 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 292 326 IPR002885 -
Vvi18g1334 446 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 257 291 IPR002885 -
Vvi18g1334 446 Gene3D Tetratricopeptide repeat domain 1 59 IPR011990 GO:0005515
Vvi18g1334 446 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 191 225 IPR002885 -
Vvi18g1334 446 NCBIfam pentatricopeptide repeat 260 292 IPR002885 -
Vvi18g1334 446 NCBIfam pentatricopeptide repeat 32 58 IPR002885 -
Vvi18g1334 446 NCBIfam pentatricopeptide repeat 96 126 IPR002885 -
Vvi18g1334 446 NCBIfam pentatricopeptide repeat 331 354 IPR002885 -
Vvi18g1334 446 NCBIfam pentatricopeptide repeat 160 192 IPR002885 -
Vvi18g1334 446 NCBIfam pentatricopeptide repeat 128 155 IPR002885 -
Vvi18g1334 446 Gene3D Tetratricopeptide repeat domain 126 221 IPR011990 GO:0005515
Vvi18g1334 446 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 30 64 IPR002885 -
Vvi18g1334 446 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 156 190 IPR002885 -
Vvi18g1334 446 Pfam PPR repeat 96 126 IPR002885 -
Vvi18g1334 446 Pfam PPR repeat 128 155 IPR002885 -
Vvi18g1334 446 Pfam PPR repeat 63 87 IPR002885 -
Vvi18g1334 446 Pfam PPR repeat 32 57 IPR002885 -
Vvi18g1334 446 Pfam PPR repeat 230 254 IPR002885 -
Vvi18g1334 446 Pfam PPR repeat 4 30 IPR002885 -
Vvi18g1334 446 Pfam PPR repeat 331 355 IPR002885 -
Vvi18g1334 446 Pfam E motif 375 438 IPR046848 -
Vvi18g1334 446 SUPERFAMILY TPR-like 112 259 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1334 Vvi-Chr18 13493089 13494429 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1334 2 446 Glycoside Hydrolase AT3G49170 28.977 4.97e-73 244
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1334 - - vvi:100267687 909.827