Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1333 ATGAAGGCGTTGATGGTTGAGGCCAATAGTTTTACCTTTACCTTCCTTCTTAAATGTTTTGAAACCTCACAAGCCTTGGAAGATGGTAGAGTGATACATGGTGAAATTTTGAAGTTGGGTTTTGGTTCTAGTGTGTTTGTTCAGAATTCCCTTTTGGGTTTCTATGCAAACTGCAGTGAGAATTTAGGTTCTGCTTACCGGGTATTTGAGGAAATGCCTGAACGAGATGTTATTTCATGGAATTCTATGATTAGTGCTTATATGACTCGTGGGGAGATACAATCTGCAATAGGGTTGTTGGATAAGATGCCAGAGCGGAACATTGTGACGTGGAATTCTGTTGTTTGTGGGCTGTCTAAGGCTGGGAACATGGAGTTAGCTCATTCTGTCTTTGAGCAGATGCCACTGAGAAATGAGGTTTCTTGGAATTCAATGATTTCTGGATATGTAAGGATTGGTGATGTGAGGGCTGCACAGTCTATTTTTTATCAGATGCCTGAGAAAACTGTGGTTTCCTGGACGGCCATGATTTCAGGATATGCAACAAATGGAGATCTTAAATCTGCAGAAAACATTTTCAATCATATGCCAGTTAAAAATGTGGTCTCATGGAATGCTATGATTTCAGGTTATGTTCACAACCATGAGTTTGATCAAGCTCTGTGTGTATTTCATCATATGTTAATCAATGGTGAGTGCAGGCCTGACCAGACTACTTTGATCAGTATACTGTCTGCCTGTGCTCATTTGGGGTCTCTTGAACATGGGAAGTGGATCAATTCATATATTAAGAAAAACAAGCTTCACTTGTCAATTCCATTAGGCAATGCTTTGATAGACATGTTTGCAAAATGTGGAGATGTAGAAAATGCAAAAGAAGTGTTTCATCATATGTCTAAAAGATGTATAATCACATGGACAACAATGGTTTCAGGGCTTGCGGTTAATGGGAAATGTAGAGAAGCCATAAATCTCTTTGATAAGATGTGTCTAGAAGGAACAAAACCAGATGATGTTATCTTCATTGCTGTTCTGTCAGCTTGCACTCATGGAGGTCTGGTGGAAGAAGGTAAAAGGGTATTTGATCAAATGGTGCAAGAATTTGGTATTAAACCCCGAATTGAGCATTATGGTTGCATGGTTGATCTTCTTGGTCGAGCAGGGAAGTTAGAAGAAGCAGTCAGATTCACAGCAAGAATGCATTTGAAGCCAAATGCTGTCATTTGGGCCACTTTGTTATTTTGTTGTAAGATTCATGGAAATGGAGATTTGTTAAAATCCGTGACTGAGAAAATTATGGATCAGGAGCCTTCAAATCCCAGCTATTTAACTTTGGTTTCAAATTTGAGTGCTTCATTTGGACGGTGGGAAGATGTCTTGAGCTTTCGGGTAGCAATGAGACAGCAAAGAATGGAAAAAGTACCTGGTTGTAGCTCAATCCAAGTAGGGAACAGGGTCCATGAATTTCTAGCTAAGGATACACGGCATGTGCAAAGGAAGGAAATTTATAGAGCTTTGGTTTGTTTAAATGGACAGTTGAAAGTTGAATGTGATTGTGCTATAAGAATATCACAATGA 1578 0.3935 MKALMVEANSFTFTFLLKCFETSQALEDGRVIHGEILKLGFGSSVFVQNSLLGFYANCSENLGSAYRVFEEMPERDVISWNSMISAYMTRGEIQSAIGLLDKMPERNIVTWNSVVCGLSKAGNMELAHSVFEQMPLRNEVSWNSMISGYVRIGDVRAAQSIFYQMPEKTVVSWTAMISGYATNGDLKSAENIFNHMPVKNVVSWNAMISGYVHNHEFDQALCVFHHMLINGECRPDQTTLISILSACAHLGSLEHGKWINSYIKKNKLHLSIPLGNALIDMFAKCGDVENAKEVFHHMSKRCIITWTTMVSGLAVNGKCREAINLFDKMCLEGTKPDDVIFIAVLSACTHGGLVEEGKRVFDQMVQEFGIKPRIEHYGCMVDLLGRAGKLEEAVRFTARMHLKPNAVIWATLLFCCKIHGNGDLLKSVTEKIMDQEPSNPSYLTLVSNLSASFGRWEDVLSFRVAMRQQRMEKVPGCSSIQVGNRVHEFLAKDTRHVQRKEIYRALVCLNGQLKVECDCAIRISQ* 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1333 525 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 302 336 IPR002885 -
Vvi18g1333 525 Pfam PPR repeat family 199 248 IPR002885 -
Vvi18g1333 525 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 200 235 IPR002885 -
Vvi18g1333 525 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 76 110 IPR002885 -
Vvi18g1333 525 Gene3D Tetratricopeptide repeat domain 136 271 IPR011990 GO:0005515
Vvi18g1333 525 Gene3D Tetratricopeptide repeat domain 1 135 IPR011990 GO:0005515
Vvi18g1333 525 Gene3D Tetratricopeptide repeat domain 276 522 IPR011990 GO:0005515
Vvi18g1333 525 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 138 172 IPR002885 -
Vvi18g1333 525 Pfam PPR repeat 304 333 IPR002885 -
Vvi18g1333 525 Pfam PPR repeat 340 366 IPR002885 -
Vvi18g1333 525 Pfam PPR repeat 276 302 IPR002885 -
Vvi18g1333 525 Pfam PPR repeat 109 135 IPR002885 -
Vvi18g1333 525 Pfam PPR repeat 78 108 IPR002885 -
Vvi18g1333 525 Pfam PPR repeat 376 400 IPR002885 -
Vvi18g1333 525 Pfam PPR repeat 140 168 IPR002885 -
Vvi18g1333 525 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 109 516 IPR046960 GO:0003723|GO:0009451
Vvi18g1333 525 NCBIfam pentatricopeptide repeat 304 337 IPR002885 -
Vvi18g1333 525 NCBIfam pentatricopeptide repeat 171 200 IPR002885 -
Vvi18g1333 525 NCBIfam pentatricopeptide repeat 109 135 IPR002885 -
Vvi18g1333 525 NCBIfam pentatricopeptide repeat 202 236 IPR002885 -
Vvi18g1333 525 NCBIfam pentatricopeptide repeat 78 109 IPR002885 -
Vvi18g1333 525 NCBIfam pentatricopeptide repeat 340 372 IPR002885 -
Vvi18g1333 525 NCBIfam pentatricopeptide repeat 140 167 IPR002885 -
Vvi18g1333 525 NCBIfam pentatricopeptide repeat 276 301 IPR002885 -
Vvi18g1333 525 Pfam E motif 428 481 IPR046848 -
Vvi18g1333 525 FunFam Pentatricopeptide repeat-containing protein 167 266 - -
Vvi18g1333 525 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 337 372 IPR002885 -
Vvi18g1333 525 FunFam Pentatricopeptide repeat-containing protein 274 489 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1333 Vvi-Chr18 13489003 13490580 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi18g1333 9 514 Glycoside Hydrolase AT3G49170 30.612 2.76e-85 280
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1333 - - vvi:100262528 1068.91