Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g1330 ATGGCTCTGGAGAATTGTTTTCAAGTGAGCACAGTGTCTTGTGCCAGAGCTGGTGTTCTTCAGTCCCACCATCCATTTTCTGCTAAGGAAAAGCTTAATTTGCCGACATGTAAAGGAGTCAAACCGTCCATTTTATCATTCTCCTCCTCACCTTCTTCCTTGGATTACTCCTTCCATCGCATCTGCCGCAAGTCCCGCATTGTCTGCAAAGCTCGCGAGGCCGTAGATGAAGTTCAAGTGGTGACAGATTCAAGCTGGAGTAACGTTGTGATTGCAAGTGAAAACCCAGTTCTAGTGGAGTTTTGGGCACCATGGTGTGGGCCTTGTCGGATGATTGCGCCAGTGATCGATGAATTAGCCAAGGAGTATGCAGGAAAGATCGTGTGCTGCAAGGTCAACACTGACGATTGTCCAAACATTGCCACCCAGTATGGGATAAGGAGCATCCCCACTGTTCTCTTTTTCAAGAATGGGGAGAGGAAGGAGAGTGTGATTGGTGCGGTGCCCAAGTCCACCCTCACTGCCACCATAGAGAAATATGTAGACATGTGA 552 0.4837 MALENCFQVSTVSCARAGVLQSHHPFSAKEKLNLPTCKGVKPSILSFSSSPSSLDYSFHRICRKSRIVCKAREAVDEVQVVTDSSWSNVVIASENPVLVEFWAPWCGPCRMIAPVIDELAKEYAGKIVCCKVNTDDCPNIATQYGIRSIPTVLFFKNGERKESVIGAVPKSTLTATIEKYVDM* 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g1330 183 NCBIfam thioredoxin 82 180 IPR005746 GO:0015035
Vvi18g1330 183 Pfam Thioredoxin 78 179 IPR013766 -
Vvi18g1330 183 PRINTS Thioredoxin family signature 105 114 - -
Vvi18g1330 183 PRINTS Thioredoxin family signature 97 105 - -
Vvi18g1330 183 PRINTS Thioredoxin family signature 145 156 - -
Vvi18g1330 183 Gene3D Glutaredoxin 78 182 - -
Vvi18g1330 183 FunFam Thioredoxin 72 181 - -
Vvi18g1330 183 SUPERFAMILY Thioredoxin-like 66 182 IPR036249 -
Vvi18g1330 183 PANTHER GEO12009P1 71 181 - -
Vvi18g1330 183 CDD TRX_family 90 178 - -
Vvi18g1330 183 ProSitePatterns Thioredoxin family active site. 98 116 IPR017937 -
Vvi18g1330 183 ProSiteProfiles Thioredoxin domain profile. 38 182 IPR013766 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g1330 Vvi-Chr18 13444805 13445793 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g1330 K03671 - vvi:100264263 364.77